PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0002s0820.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 605aa    MW: 66493.2 Da    PI: 7.7971
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0002s0820.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07489537348
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                             +WT  E  +lv++v  +G g+W+ I r        Rt  ++k++w+++l
  SapurV1A.0002s0820.4.p 489 AWTLCEVMKLVEGVSSYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 537
                             7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.545482541IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-12484544IPR009057Homeodomain-like
SMARTSM007172.9E-7486539IPR001005SANT/Myb domain
SuperFamilySSF466892.57E-15488547IPR009057Homeodomain-like
CDDcd116607.22E-18488538No hitNo description
PfamPF002492.0E-5489537IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MGTVVEVEGN DEAKLKECGI HNSTSLSSPK QISDPVVYKL VRLEGDGRIV PATDDELIEV  60
ESLLIDEKCE MHFVADPGQT VGCISNEGSS TGIAQLESLE GLLQSRNKEA GSDKLNARLE  120
ETVPSLAPSL SESHFNQSGS AGECSHSSDN LVAAGSTSSA VTTKPDFSKL KGEICLDNLS  180
IKELHETFKA TFGRETTVKD KQWLKRRISM GLTNSCDVSV TSFIIKDNKL VKKENEEISN  240
CMDGSYAEDQ PIGNQKDLLT SLNQLDYHQV VPEKRLENPS LDDNSGSDDH QTEQRAAKRV  300
RKPTKRYIEE LSEVEPKESN GRLMNLAKNS GHGLISLKSH VRPVRNVILG GRTVVTRLDS  360
LGGYGIEVPC VSRVRRSRPR KNFMALLKFN PSGMGTEAML VKKVHGDHSF PPDDEKESRV  420
FLKANSTPEH VHHQFIGVPE KDKQFSVMSA IGLGHNMELK CMNSSGDSDD NVVTVPTPKG  480
GIRRKHHRAW TLCEVMKLVE GVSSYGAGRW SEIKRLAFAS YSYRTSVDLK DKWRNLLKAS  540
LAQTPQDNGM NSRKNTGAMP IPAPILLKVR ELAEMQAQAL PNLSSTKIAG SPRKNVHEKQ  600
TGFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374380RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0002s0820.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0292441e-96CT029244.1 Poplar cDNA sequences.
GenBankCT0295441e-96CT029544.1 Poplar cDNA sequences.
GenBankCT0295451e-96CT029545.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453600.10.0uncharacterized protein LOC7475702 isoform X3
TrEMBLA0A2K2B2H00.0A0A2K2B2H0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06240.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-124TRF-like 6