PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0001s2820.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 243aa    MW: 27598.6 Da    PI: 4.8917
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0001s2820.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438e-1457100755
                             HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               Er+RR+++N+++ eLr  +P  +      Kl+Ka++ + A++YI++Lq
  SapurV1A.0001s2820.1.p  57 VSERNRRKKLNDKLLELRGAVPRiS------KLDKASTIKDAIDYIQDLQ 100
                             57*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.2245099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.08E-1253104No hitNo description
SuperFamilySSF474595.1E-1753116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1656116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-1456105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-1157100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEPIENIAEL QNYWEMTDIF WNDELQRWAM DEAPTQSNEY SSSPEGAAST IASKNIVSER  60
NRRKKLNDKL LELRGAVPRI SKLDKASTIK DAIDYIQDLQ EQERNLQAEI MELESESLKK  120
DPGFDFEEEL PILLRSKKSR CDQIYDHRVP MSHPIKVHEL RVNSMGENTL LVSLTCSKAG  180
DAMIKICDIF ESMKLKIITA NVAIVSGMVK KTVLIEADMG EKDNLKIKIE RAISAVSDHW  240
ST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0001s2820.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460552.11e-140transcription factor bHLH35 isoform X1
SwissprotQ2HIV94e-63BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2K1ZYF11e-138A0A2K1ZYF1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s07410.11e-138(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-65bHLH family protein