PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0001s2320.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SBP
Protein Properties Length: 463aa    MW: 50952.8 Da    PI: 8.0563
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0001s2320.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.21.3e-39169246178
                             --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                     SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                             +CqvegC+ dl++ak+yhr+h++Ce+hsk+p+v+++++e+rfCqqCsrfhelsefD++krsCr+rL+ hn+rrr++q+
  SapurV1A.0001s2320.2.p 169 QCQVEGCSFDLKSAKDYHRKHRICEKHSKSPKVIIADMERRFCQQCSRFHELSEFDDKKRSCRKRLSYHNARRRRPQP 246
                             5**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.9E-33163231IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.436167244IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.01E-36168249IPR004333Transcription factor, SBP-box
PfamPF031101.6E-30170243IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MNWNSTASEG DWENIAKISD IPKQVELVYH ESKGGGAVDK AIACSSSGGG LSGSDLWHGA  60
SSKSSVSPSV NSSLKEEIKT YSTTDGFPGD IIKKKDLTRV ESTENTPSLG ASASPGELII  120
GLKLGKRVYF EDNCTTSTAN SSSSSIISTS CTVTPKRSRA SYPSTQSPQC QVEGCSFDLK  180
SAKDYHRKHR ICEKHSKSPK VIIADMERRF CQQCSRFHEL SEFDDKKRSC RKRLSYHNAR  240
RRRPQPEAIR FNSARLSSSF YDGRQQLNSV LNRMPFLEAN ATWQSNCSFK VTHSGDFFIR  300
PAKAGGIRRQ LSCPLNEVPD ATSTILTDSN RFLSFESSTP RAFSQGYDGY ALTSNMEVEP  360
DLRCALSLLS TTSWGLNDHG CTSLDQLTLA NQTSMTQPMI NAELQNWSIA SSENARVEQL  420
PLDSGVHSLD LHGNGNIQLQ ECQLLKPQSP YAMSCFHSNQ FS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-251702431184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225242KKRSCRKRLSYHNARRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0001s2320.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2130887e-45AC213088.1 Populus trichocarpa clone POP086-B14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446070.10.0squamosa promoter-binding-like protein 12 isoform X2
TrEMBLU5FGJ80.0U5FGJ8_POPTR; Uncharacterized protein
STRINGPOPTR_0018s14680.20.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.36e-55squamosa promoter binding protein-like 2