PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0001s1700.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 750aa    MW: 84902.1 Da    PI: 7.2268
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0001s1700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS383.42.7e-1173737441374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l++lL++cA+av+++d + a++lL++++ ++sp gd ++Rla++f+ +L+arla+++s++yk l +++ts    ++ l+a++l+  +
  SapurV1A.0001s1700.1.p 373 LRTLLISCAQAVAADDRRSANELLKQIRLHSSPFGDGNRRLAHCFADGLEARLAGTGSQIYKGLVSKRTS---AADLLKAYRLYLAA 456
                             6789************************************************************999999...9************* PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                             +P+ k+ +++ N++I  a+ ++ r+H+iDf+i +G+QWp++++ L++Rp+gpp+lR+Tg++ p++g   +e++eetg+rLa +A+e+
  SapurV1A.0001s1700.1.p 457 CPFRKVFNFVSNKTIRYAAGNSMRLHVIDFGILYGFQWPTFIHRLSCRPGGPPKLRMTGIEFPQPGfrPAERVEETGRRLAAYAKEF 543
                             *****************************************************************9********************* PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +vpfe+n+ +ak++e+++leeL+++p+E+++Vn+ ++ ++llde+v+++s+r+ vL+lv++++P+++++   +  +n++ +++rf e
  SapurV1A.0001s1700.1.p 544 KVPFEYNA-IAKKWETIQLEELKLDPDEVVVVNCLYRAKNLLDETVAVDSPRNIVLDLVRKINPDIFIHGIINGAYNAPFYVTRFRE 629
                             ********.7***************************************************************************** PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             al ++sa+fd+le+ +pre+ er ++E+e++gre+ nv+aceg er+er et+++W+ r  +aGF +++++ +++kqa + +r+ + 
  SapurV1A.0001s1700.1.p 630 ALFHFSAMFDMLETIVPREELERLVIEKEIFGREALNVIACEGWERVERPETYKQWQVRCLRAGFVQLSFDREIVKQATAKVRHSYH 716
                             **************************************************************************************8 PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                             + + ++e+s +l++gWk+r ++++SaW+
  SapurV1A.0001s1700.1.p 717 KDFLIDEDSRWLLQGWKGRIIYTLSAWK 744
                             88*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.335347724IPR005202Transcription factor GRAS
PfamPF035149.4E-115373744IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MDPRLRGYSN PMNGIQLGNQ PISVLSNQNL VSRPIFENTL VDHNCKEFHY VPPYPKPTDV  60
TPYSNLTDKE DSPEDFDFSD VTLRYINQML MEEDTEAKTC VLQDSLDLQA AEKSFYDVLG  120
KKYPPSPEPY PTFISQNRRN LPDCLPCNYI CSSSSDSGYV DDNAWIHNPS DYHSFQLQTP  180
HVSSISQSSY SSSNSVITTV DGLVDSPNSN FKVPDWSGES QSILHFRKGV EEASRFLPSS  240
NDLFLNIEAN KFLSQEPKVK TSEVDIKVEK QDEGEHSPSG SRGKKNLHRE DGDVEEGRSS  300
KQLAVYTESI LRSDMFDKVL LCMPGEGQPD LTALREAFKS ASIKNEQNGH AKGSSGVKGR  360
GKKQSGKKEV VDLRTLLISC AQAVAADDRR SANELLKQIR LHSSPFGDGN RRLAHCFADG  420
LEARLAGTGS QIYKGLVSKR TSAADLLKAY RLYLAACPFR KVFNFVSNKT IRYAAGNSMR  480
LHVIDFGILY GFQWPTFIHR LSCRPGGPPK LRMTGIEFPQ PGFRPAERVE ETGRRLAAYA  540
KEFKVPFEYN AIAKKWETIQ LEELKLDPDE VVVVNCLYRA KNLLDETVAV DSPRNIVLDL  600
VRKINPDIFI HGIINGAYNA PFYVTRFREA LFHFSAMFDM LETIVPREEL ERLVIEKEIF  660
GREALNVIAC EGWERVERPE TYKQWQVRCL RAGFVQLSFD REIVKQATAK VRHSYHKDFL  720
IDEDSRWLLQ GWKGRIIYTL SAWKPANKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-483567451379Protein SCARECROW
5b3h_D2e-483567451379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0001s1700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459869.10.0scarecrow-like protein 9 isoform X1
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A3N7F3E70.0A0A3N7F3E7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s08690.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein