PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0001s1670.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 289aa    MW: 32283.6 Da    PI: 5.0725
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0001s1670.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.2e-32114170258
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                             dDgy+WrKYGqK++k+s++prsYYrCt ++C +kk+vers+edp++++itYeg H h
  SapurV1A.0001s1670.1.p 114 DDGYKWRKYGQKSIKNSPHPRSYYRCTNPRCGAKKQVERSSEDPETLVITYEGLHLH 170
                             8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.577108173IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-30110170IPR003657WRKY domain
SuperFamilySSF1182903.92E-27111171IPR003657WRKY domain
SMARTSM007742.6E-37113172IPR003657WRKY domain
PfamPF031064.5E-26114170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEEVMKSSAW FDESEDELVR ELLDDESPFF FLPEEKNQST PRPTNEQTIN QFISKVYSGP  60
SIQDIEDALS MTSRKDQSQA VSQARISLLQ KSLSKMENNK YTLKLNSCGN GMADDGYKWR  120
KYGQKSIKNS PHPRSYYRCT NPRCGAKKQV ERSSEDPETL VITYEGLHLH YAYPYFLLDQ  180
PQHVDPPSKK PKRAISEAHE TPDQAQEYSA HATSPASLPS TSTAEESGLE ATGPRGLLED  240
VVPYMVRNPS NHNVSSNSSS YPSPPTSPPW SPNLSYSCFD IALDTSTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-231121701674Probable WRKY transcription factor 4
2lex_A5e-231121701674Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0001s1670.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1273700.0JN127370.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY32 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309066.21e-150probable WRKY transcription factor 49
TrEMBLB9HBN21e-149B9HBN2_POPTR; Uncharacterized protein
STRINGPOPTR_0006s08730.11e-149(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.17e-52WRKY DNA-binding protein 49