PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0001s0200.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 540aa    MW: 58867.4 Da    PI: 7.0637
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0001s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.4e-31253310260
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                             +Dgy+WrKYGqK+vkgse+prsYY+Ct+++C++kkkvers  d++++ei+Y+g+H+h+k
  SapurV1A.0001s0200.1.p 253 EDGYKWRKYGQKQVKGSENPRSYYKCTYPNCSTKKKVERSL-DGHITEIVYKGSHDHPK 310
                             7****************************************.***************85 PP
2WRKY103.41.3e-32411469159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK+vkg+++prsYY+Cts gCpv+k+ver+a+d ++v++tYeg+H h+
  SapurV1A.0001s0200.1.p 411 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSVGCPVRKHVERAAHDLRAVITTYEGKHSHD 469
                             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-26246311IPR003657WRKY domain
SuperFamilySSF1182904.71E-24246311IPR003657WRKY domain
PROSITE profilePS5081122.86247311IPR003657WRKY domain
SMARTSM007742.4E-33252310IPR003657WRKY domain
PfamPF031061.0E-23253309IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-36396471IPR003657WRKY domain
SuperFamilySSF1182901.02E-28403471IPR003657WRKY domain
PROSITE profilePS5081137.815406471IPR003657WRKY domain
SMARTSM007748.3E-38411470IPR003657WRKY domain
PfamPF031065.5E-25412469IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MASSASASLT TCLDSPSNFS LSAQFMTSSS PSFTSLLSGN NKYMDDQSWG LYDHGTNDRN  60
GIEISNFLSS QPPALPLSPP PVSPSSYWAI PPGLSPAELL DSPVLFPTSY APASPTSGTF  120
AGQSFNWRSN SNDNQRGVSG EEKDCSDFSF QTQTRPPAIS SSSSSLFQTS SNSVVVEKSL  180
KRKHEGWDFN QLKQADFSSD QKTAVKSEFA PVQSFSSELV PLQANMKNSS APQPSYSQYN  240
QAGHYMRENG RSEDGYKWRK YGQKQVKGSE NPRSYYKCTY PNCSTKKKVE RSLDGHITEI  300
VYKGSHDHPK PLSTRRSSSQ SVHPSGDEIS DQSGAPMESG MMKEDSSISL GEDDIDHSSP  360
ISNSGGEDNE NEPDANRWQG QNENESILGA GSKTVREPRI VVQTTSDIDI LDDGYRWRKY  420
GQKVVKGNPN PRSYYKCTSV GCPVRKHVER AAHDLRAVIT TYEGKHSHDV PAARGSVYVN  480
RAPSIAITTA TAPIPIRPSA MANHSNQTSY HPNSLHSTGS GNQAPFTLQM LQSQGSFGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-36253472878Probable WRKY transcription factor 4
2lex_A5e-36253472878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0001s0200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019054.10.0PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 33
SwissprotQ6B6R41e-121WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2K2A0220.0A0A2K2A022_POPTR; Uncharacterized protein
STRINGPOPTR_0006s10600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-109WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]