PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo9G0049100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 155aa    MW: 18409.8 Da    PI: 8.7351
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo9G0049100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1661.3e-51161421128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     l+pGfrFhPt+eelv +yL++kveg+++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + s+
  Spipo9G0049100  16 LMPGFRFHPTEEELVEFYLRRKVEGRPFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSE 109
                     689***************************.89***************888889***************************************** PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++ +glkktLvfy+g+apkg++t+W+m+eyrl
  Spipo9G0049100 110 SSRSIGLKKTLVFYSGKAPKGVRTSWIMNEYRL 142
                     *******************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-5514149IPR003441NAC domain
PROSITE profilePS5100552.94116154IPR003441NAC domain
PfamPF023654.3E-2618142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MNSREEDDDG HEHDVLMPGF RFHPTEEELV EFYLRRKVEG RPFNVELITF LDLYRYDPWE  60
LPAMAAIGEK EWFFYVPRDR KYRNGDRPNR VTTSGYWKAT GADRMIRSES SRSIGLKKTL  120
VFYSGKAPKG VRTSWIMNEY RLPHHETDRY LKVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-5461427142NO APICAL MERISTEM PROTEIN
1ut4_B1e-5461427142NO APICAL MERISTEM PROTEIN
1ut7_A1e-5461427142NO APICAL MERISTEM PROTEIN
1ut7_B1e-5461427142NO APICAL MERISTEM PROTEIN
4dul_A1e-5461427142NAC domain-containing protein 19
4dul_B1e-5461427142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022897039.19e-99NAC domain-containing protein 35-like
RefseqXP_028793227.11e-98NAC domain-containing protein 35-like
SwissprotQ9ZVP89e-92NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A2P5BY548e-97A0A2P5BY54_PARAD; NAC domain containing protein
STRINGXP_008382796.16e-97(Malus domestica)
STRINGXP_009626107.11e-96(Nicotiana tomentosiformis)
STRINGXP_004301581.14e-96(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.13e-94NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]