PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo9G0044300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | NAC | ||||||||
Protein Properties | Length: 323aa MW: 35622.2 Da PI: 7.4038 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.5 | 4.5e-52 | 11 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelv++yL++k++g ++ + +i+++diyk++Pw+Lp + ++e+ewyfFs+rd+ky++g+r+nra+ sgyWkatg dk+v + Spipo9G0044300 11 LPPGFRFHPTDEELVMHYLCRKCAGLPIAV-PIIADIDIYKCDPWELPGLALHGEREWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPVGT- 103 79**************************99.88***************76667899************************************98. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 + vg+kk Lvfy+g+apkgek++W+mheyrl Spipo9G0044300 104 -PRPVGIKKALVFYSGKAPKGEKSNWIMHEYRL 135 .789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-63 | 4 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.845 | 11 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-27 | 12 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MMTMNSGDLQ LPPGFRFHPT DEELVMHYLC RKCAGLPIAV PIIADIDIYK CDPWELPGLA 60 LHGEREWYFF SPRDRKYPNG SRPNRAAGSG YWKATGADKP VGTPRPVGIK KALVFYSGKA 120 PKGEKSNWIM HEYRLADVDR SVRRKNSLRL DDWVLCRIYN KKGAGENQVN AAAQKGAATE 180 TSRIDGRRPE PPPLAPKVEP LLRPDSPPPL AQPLQQQQVS EYVYLEADSV PRLRAESSCS 240 EQALSSSPGF AWDEVQSQPR WGNWLRDTLN VPAGDEESPT AAAAGFDGDG GAAVGFSSLG 300 QFSSLFRDPP LPDLLSYLQK PF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-76 | 6 | 167 | 10 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020681182.1 | 1e-125 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-120 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A2I0W5C4 | 1e-124 | A0A2I0W5C4_9ASPA; NAC domain-containing protein 2 | ||||
STRING | XP_010095416.1 | 1e-121 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3417 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 5e-97 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo9G0044300 |