PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo9G0038800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Dof

Protein Properties

Length: 250aa MW: 27640 Da PI: 4.9681

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo9G0038800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.2	2.8e-36	29	82	7	60
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC+s+ntkfCyynnysl+qPryfCkaCrryWt+GGalrnvP+Gg++r++ + Spipo9G0038800 29 SCPRCESSNTKFCYYNNYSLAQPRYFCKACRRYWTEGGALRNVPIGGTTRRKSR 82 7***********************************************999865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-22	15	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.782	28	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-31	29	81	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MEPYSYFLHS PAPSMAERRW NPAVVWAPSC PRCESSNTKF CYYNNYSLAQ PRYFCKACRR 60 YWTEGGALRN VPIGGTTRRK SRPKPPAGRP HSSPPVRNEP PAAVSLPPVE CPSGGSDAPK 120 LAFTEVEFEV GRLLGRTNVG SYYQQMSTQM GQEQPPAGEE FPWPSPDVTA EETLLLDNLS 180 PFSVDSLGAM PPAEELAYEE VFWSGSPTVE GSCPWQRPQS LKTGATEEDQ PLPLPQLSPF 240 TMPSYEAFR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	5e-32	Dof family protein

Link Out ? help Back to Top
Phytozome	Spipo9G0038800