PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo9G0028800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family G2-like
Protein Properties Length: 265aa    MW: 28470.2 Da    PI: 9.3285
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo9G0028800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.61.1e-31174229156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     kpr++W+peLH+rFv+a+eqLGG+++AtPk+++elmkv+gLt++++kSHLQk+Rl+
  Spipo9G0028800 174 KPRRCWSPELHQRFVDALEQLGGAKVATPKKVKELMKVEGLTNDEIKSHLQKFRLH 229
                     79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.96171231IPR017930Myb domain
SuperFamilySSF466892.42E-16173231IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-28174232IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-26174229IPR006447Myb domain, plants
PfamPF002499.3E-8176226IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGCLPASELS LELRPPSTPR DTMAPFLSAP AAAGGGGGGP GSGTELEEYL RGLEEERRKI  60
EVFRRELPLC VIILNDVIED LKEEMTQRRS KKKQEDDGRM NWMSSTQLWC NNSSTTTAST  120
GGRENKSSAA LHGSVRGPSP PSTADTTPPQ LSLLPLAAFS AAEKQAPPQP AAVKPRRCWS  180
PELHQRFVDA LEQLGGAKVA TPKKVKELMK VEGLTNDEIK SHLQKFRLHA QRSAAPLSPA  240
NQAAVAVAAA GGSSWKDRQR GNWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-14174229155Transcription factor LUX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.12e-27G2-like family protein