PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo9G0016400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MIKC_MADS
Protein Properties Length: 146aa    MW: 16650.1 Da    PI: 9.5199
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo9G0016400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.7e-31958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtfskRr g+lKKA+E+SvLCdaeva+iifss+gklye+s
  Spipo9G0016400  9 KRIENNINRQVTFSKRRSGLLKKAHEISVLCDAEVALIIFSSKGKLYEFS 58
                    79***********************************************8 PP
2K-box67.45e-23881431469
           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                     + s++ e+++Lk+++e Lq++qRh++GedLesL++keLq+LeqqLe +lk++ ++K
  Spipo9G0016400  88 QGSWSLESSQLKAKVEALQKTQRHFMGEDLESLNIKELQHLEQQLEVGLKQVITRK 143
                     5689************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.941161IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-35288IPR002100Transcription factor, MADS-box
CDDcd002651.28E-41276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-32323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-323859IPR002100Transcription factor, MADS-box
PfamPF014866.5E-1888143IPR002487Transcription factor, K-box
PROSITE profilePS5129712.1588145IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MGRGKVQLKR IENNINRQVT FSKRRSGLLK KAHEISVLCD AEVALIIFSS KGKLYEFSAN  60
SSMERILDRY ERYCGAEREL VAPDTELQGS WSLESSQLKA KVEALQKTQR HFMGEDLESL  120
NIKELQHLEQ QLEVGLKQVI TRKIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-23173172MEF2C
5f28_B5e-23173172MEF2C
5f28_C5e-23173172MEF2C
5f28_D5e-23173172MEF2C
6byy_A6e-23173172MEF2 CHIMERA
6byy_B6e-23173172MEF2 CHIMERA
6byy_C6e-23173172MEF2 CHIMERA
6byy_D6e-23173172MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080420.15e-74truncated transcription factor CAULIFLOWER A isoform X1
RefseqXP_028059192.15e-74truncated transcription factor CAULIFLOWER A-like isoform X1
RefseqXP_028059193.14e-74truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotQ6E6S73e-74AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLU3RGG62e-73U3RGG6_DICEX; FRUITFULL-like protein (Fragment)
STRINGevm.model.supercontig_1.1621e-72(Carica papaya)
STRINGXP_010257957.11e-72(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-71MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]