PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo9G0016400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 146aa MW: 16650.1 Da PI: 9.5199 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.1 | 1.7e-31 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRr g+lKKA+E+SvLCdaeva+iifss+gklye+s Spipo9G0016400 9 KRIENNINRQVTFSKRRSGLLKKAHEISVLCDAEVALIIFSSKGKLYEFS 58 79***********************************************8 PP | |||||||
2 | K-box | 67.4 | 5e-23 | 88 | 143 | 14 | 69 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 + s++ e+++Lk+++e Lq++qRh++GedLesL++keLq+LeqqLe +lk++ ++K Spipo9G0016400 88 QGSWSLESSQLKAKVEALQKTQRHFMGEDLESLNIKELQHLEQQLEVGLKQVITRK 143 5689************************************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.941 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.2E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.67E-35 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.28E-41 | 2 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.2E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.5E-18 | 88 | 143 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.15 | 88 | 145 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MGRGKVQLKR IENNINRQVT FSKRRSGLLK KAHEISVLCD AEVALIIFSS KGKLYEFSAN 60 SSMERILDRY ERYCGAEREL VAPDTELQGS WSLESSQLKA KVEALQKTQR HFMGEDLESL 120 NIKELQHLEQ QLEVGLKQVI TRKIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-23 | 1 | 73 | 1 | 72 | MEF2C |
5f28_B | 5e-23 | 1 | 73 | 1 | 72 | MEF2C |
5f28_C | 5e-23 | 1 | 73 | 1 | 72 | MEF2C |
5f28_D | 5e-23 | 1 | 73 | 1 | 72 | MEF2C |
6byy_A | 6e-23 | 1 | 73 | 1 | 72 | MEF2 CHIMERA |
6byy_B | 6e-23 | 1 | 73 | 1 | 72 | MEF2 CHIMERA |
6byy_C | 6e-23 | 1 | 73 | 1 | 72 | MEF2 CHIMERA |
6byy_D | 6e-23 | 1 | 73 | 1 | 72 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00096 | ChIP-seq | Transfer from AT1G69120 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012080420.1 | 5e-74 | truncated transcription factor CAULIFLOWER A isoform X1 | ||||
Refseq | XP_028059192.1 | 5e-74 | truncated transcription factor CAULIFLOWER A-like isoform X1 | ||||
Refseq | XP_028059193.1 | 4e-74 | truncated transcription factor CAULIFLOWER A-like isoform X2 | ||||
Swissprot | Q6E6S7 | 3e-74 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | U3RGG6 | 2e-73 | U3RGG6_DICEX; FRUITFULL-like protein (Fragment) | ||||
STRING | evm.model.supercontig_1.162 | 1e-72 | (Carica papaya) | ||||
STRING | XP_010257957.1 | 1e-72 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1151 | 37 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-71 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo9G0016400 |
Publications ? help Back to Top | |||
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