PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0062400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family G2-like
Protein Properties Length: 429aa    MW: 46955 Da    PI: 6.9305
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0062400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.3e-32236291156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+peLH+rF++a++qLGGs++AtPk+i++lmkv+gLt+++vkSHLQkYRl+
  Spipo8G0062400 236 KARRCWSPELHRRFLDALQQLGGSHVATPKQIRDLMKVEGLTNDEVKSHLQKYRLH 291
                     68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.841232293IPR017930Myb domain
SuperFamilySSF466894.18E-17234293IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-28234294IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-26236291IPR006447Myb domain, plants
PfamPF002492.7E-7238289IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MVGSMVVEDV IADTTTVEER AWGYKDYVEA LEEERRKIQV FQRELPLSLR LVTQTIDSCR  60
QRMAGAGCRS EVDEEETSCE GGPILEEFIP IKRRSSPGAD QGEEDGHRQE QISNASHHEE  120
DSFSTSKRKN QDFSEKKPDW LRSVQLWSPL PDPHHDEDDE TSRQTIVAAD RNKVTSAFHP  180
FLPQKRSPPP ATGTVEVATA PGLVKPAPAV SCTSDGRGGK SGGSGGEDKD AHPNRKARRC  240
WSPELHRRFL DALQQLGGSH VATPKQIRDL MKVEGLTNDE VKSHLQKYRL HSRRPSPAMS  300
HSNAANAPPH QVVFLGGLWV PPPEYAVAAA AAVAHPPPLT EGMVCPPIYA PVASLPMLNQ  360
HQQQQQQQQA KQPHRSPSGP LPNGSRGTRE DQRGVDDGAT RSNSPATSSS SHTTSASHFN  420
RHNVAQSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-14236294260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-14236294260Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-14236289154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-14236289154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-14236289154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-14236289154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-14236294260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-14236294260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-14236294260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-14236294260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-14236294260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-14236294260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003631224.12e-95PREDICTED: myb family transcription factor EFM
TrEMBLA0A1D1XFE11e-115A0A1D1XFE1_9ARAE; Two-component response regulator ARR1
STRINGVIT_01s0011g03110.t013e-95(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64703754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.19e-71G2-like family protein