PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo8G0061400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MYB | ||||||||
Protein Properties | Length: 215aa MW: 24724.1 Da PI: 8.6679 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.4 | 8e-19 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ +Ede+l+++v+ +G g+W+tI++ g+ R++k+c++rw +yl Spipo8G0061400 13 RGAWSSQEDEKLIKYVRTHGEGRWRTIPKAAGLLRCGKSCRLRWINYL 60 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 58.2 | 1.9e-18 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++Ed+l+++++++lG++ W++Ia +++ gRt++++k++w++ Spipo8G0061400 66 RGNFTEDEDDLIIKLHALLGNR-WSLIAGRLP-GRTDNEIKNHWNS 109 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-25 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.465 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.97E-31 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-14 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.80E-11 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 28.819 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-27 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-17 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-17 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-11 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MKRNCCEKHT VNRGAWSSQE DEKLIKYVRT HGEGRWRTIP KAAGLLRCGK SCRLRWINYL 60 RPDIKRGNFT EDEDDLIIKL HALLGNRWSL IAGRLPGRTD NEIKNHWNSR LSRKLIRMGI 120 DPNKHRWSRR VPRAEHPALT IETCKSPPLC SDRVEDDGGV SREASCREDD LCPTSDLNLD 180 LTISLPFPLH GCEGQERSHE QTEETHSPTL LLFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-30 | 11 | 115 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018843704.1 | 6e-85 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | P81393 | 2e-69 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A3S3N755 | 9e-87 | A0A3S3N755_9MAGN; Transcription repressor MYB4-like protein | ||||
STRING | XP_009371802.1 | 2e-83 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-70 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Spipo8G0061400 |
Publications ? help Back to Top | |||
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