PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0047200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 326aa    MW: 37368.1 Da    PI: 8.6882
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0047200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.52.6e-5391381128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeel+ +yL+kkv+++ ++l +vi+evd++k+ePwdL++  ++ +  ++ewy Fs++dkky+tg+r+nrat++g+Wkatg+dk++
  Spipo8G0047200   9 VPPGFRFHPTDEELLYYYLRKKVAHEAMDL-DVIREVDLNKLEPWDLREtcRIGTgPQNEWYCFSHKDKKYPTGTRTNRATDAGFWKATGRDKAI 102
                     69****************************.9***************853444442456************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++++++ +g++ktLvfy+grap+g+kt+W+mheyrl
  Spipo8G0047200 103 FHSDSQRIGMRKTLVFYTGRAPRGQKTEWIMHEYRL 138
                     **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-594158IPR003441NAC domain
PROSITE profilePS5100556.479158IPR003441NAC domain
PfamPF023651.9E-2710138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEASGQLSVP PGFRFHPTDE ELLYYYLRKK VAHEAMDLDV IREVDLNKLE PWDLRETCRI  60
GTGPQNEWYC FSHKDKKYPT GTRTNRATDA GFWKATGRDK AIFHSDSQRI GMRKTLVFYT  120
GRAPRGQKTE WIMHEYRLLD DNPGIQEGGW VICRVYRKKN NQRSLASGPT LEGEQLLHCR  180
EGGSMVWGQR QNPQWPYDPP LGNSMQLPQL LSPEPSAAPY MAAASNPSDS VFSQSLMKLT  240
TGGGGLWKQQ QQQHHQQQHQ QQQQQRFHSE WSIVDKLLAS HQNLDQVFQG KWNPLLAHTV  300
DHSFSVLRFP PHSVGCEADL LRFTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-51616114168NO APICAL MERISTEM PROTEIN
1ut4_B5e-51616114168NO APICAL MERISTEM PROTEIN
1ut7_A5e-51616114168NO APICAL MERISTEM PROTEIN
1ut7_B5e-51616114168NO APICAL MERISTEM PROTEIN
3swm_A5e-51616117171NAC domain-containing protein 19
3swm_B5e-51616117171NAC domain-containing protein 19
3swm_C5e-51616117171NAC domain-containing protein 19
3swm_D5e-51616117171NAC domain-containing protein 19
3swp_A5e-51616117171NAC domain-containing protein 19
3swp_B5e-51616117171NAC domain-containing protein 19
3swp_C5e-51616117171NAC domain-containing protein 19
3swp_D5e-51616117171NAC domain-containing protein 19
4dul_A5e-51616114168NAC domain-containing protein 19
4dul_B5e-51616114168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389980.11e-139PREDICTED: NAC domain-containing protein 76-like
RefseqXP_009389981.11e-139PREDICTED: NAC domain-containing protein 76-like
SwissprotQ5Z6B64e-95NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLA0A2H3XHJ01e-136A0A2H3XHJ0_PHODC; LOW QUALITY PROTEIN: protein SOMBRERO-like
STRINGXP_008783883.11e-136(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-93NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]