PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0060400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family G2-like
Protein Properties Length: 111aa    MW: 12257.1 Da    PI: 11.3498
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0060400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like110.77.4e-353589155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprlrWt eLHerFv+av+qLGG+ekAtPk i+++m vkgLtl+h+kSHLQkYRl
  Spipo7G0060400 35 KPRLRWTAELHERFVDAVNQLGGPEKATPKMIMRTMAVKGLTLYHLKSHLQKYRL 89
                    79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-333290IPR009057Homeodomain-like
PROSITE profilePS5129411.9973292IPR017930Myb domain
SuperFamilySSF466896.45E-183491IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-253590IPR006447Myb domain, plants
PfamPF002494.4E-83788IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
RGSGNCRGRA ARGGARRMYS RSSVDACLVL TTDPKPRLRW TAELHERFVD AVNQLGGPEK  60
ATPKMIMRTM AVKGLTLYHL KSHLQKYRLG KQSSREGSDC SKNAVSRNPQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-233588255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-233588255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-233588154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-233588154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-233588154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-233588154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-233588255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-233588255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-233588255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-233588255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-233588255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-233588255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016728182.12e-45PREDICTED: myb family transcription factor APL-like
RefseqXP_017633529.12e-45PREDICTED: protein PHR1-LIKE 3-like
SwissprotQ8LAJ72e-44PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLA0A0B0NIP75e-44A0A0B0NIP7_GOSAR; Myb family transcription factor APL
TrEMBLA0A1U8MMY35e-44A0A1U8MMY3_GOSHI; myb family transcription factor APL-like
STRINGGorai.005G033900.13e-44(Gossypium raimondii)
STRINGGorai.006G222400.12e-44(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2073467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.12e-46G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]