PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0048800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 238aa    MW: 26101.2 Da    PI: 7.0474
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0048800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.82.2e-49101341128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvveyLk+kv +++l++ +vi+e+++ +++PwdLp    + eke yfFs+r+ ky++g+r+nr+ ++gyWkatgkdk++l+ 
  Spipo7G0048800  10 LPPGFRFHPTDEELVVEYLKRKVFSSPLPA-SVIPEIQLSRFDPWDLP---GGPEKERYFFSTREIKYPKGSRPNRTSAAGYWKATGKDKQILAG 100
                     79****************************.99***************...456789************************************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg kktLvfy+grap+ge+tdW+mheyrl
  Spipo7G0048800 101 gGSHVVGAKKTLVFYRGRAPSGERTDWIMHEYRL 134
                     67788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-584154IPR003441NAC domain
PROSITE profilePS5100557.87410154IPR003441NAC domain
PfamPF023651.3E-2611134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MARFQGVVRL PPGFRFHPTD EELVVEYLKR KVFSSPLPAS VIPEIQLSRF DPWDLPGGPE  60
KERYFFSTRE IKYPKGSRPN RTSAAGYWKA TGKDKQILAG GGSHVVGAKK TLVFYRGRAP  120
SGERTDWIMH EYRLAGAGEE AHMKDWVLCR VFRKPRAAAR VADDEDTGHR TAGLIDFMAV  180
DERRSSSDPA TAPPSDSEPS CVTEVSAGGA ADGDVDSSCS SPSSSPWRGD EEALELR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-51816015171NO APICAL MERISTEM PROTEIN
1ut4_B3e-51816015171NO APICAL MERISTEM PROTEIN
1ut7_A3e-51816015171NO APICAL MERISTEM PROTEIN
1ut7_B3e-51816015171NO APICAL MERISTEM PROTEIN
3swm_A3e-51816018174NAC domain-containing protein 19
3swm_B3e-51816018174NAC domain-containing protein 19
3swm_C3e-51816018174NAC domain-containing protein 19
3swm_D3e-51816018174NAC domain-containing protein 19
3swp_A3e-51816018174NAC domain-containing protein 19
3swp_B3e-51816018174NAC domain-containing protein 19
3swp_C3e-51816018174NAC domain-containing protein 19
3swp_D3e-51816018174NAC domain-containing protein 19
4dul_A3e-51816015171NAC domain-containing protein 19
4dul_B3e-51816015171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026377236.16e-83NAC domain-containing protein 83-like
SwissprotQ9FY935e-73NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A1D1Y7U87e-80A0A1D1Y7U8_9ARAE; NAC domain-containing protein 29 (Fragment)
TrEMBLA0A2H3X4022e-79A0A2H3X402_PHODC; NAC domain-containing protein 83-like
TrEMBLM0RHG71e-79M0RHG7_MUSAM; Uncharacterized protein
STRINGXP_008777977.13e-80(Phoenix dactylifera)
STRINGGSMUA_Achr10P11910_0012e-80(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-75NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]