PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo7G0022000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | Dof | ||||||||
Protein Properties | Length: 227aa MW: 24614.4 Da PI: 8.6527 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.8 | 5e-38 | 4 | 63 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprC s+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Spipo7G0022000 4 MQILRCPRCYSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRAK 63 57899****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-25 | 1 | 57 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.4E-33 | 6 | 61 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.189 | 7 | 61 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 9 | 45 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MENMQILRCP RCYSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGGCRKNK 60 RAKKPASSAS NSPPAAPVFP SANSTSRHSH LSSPSVSELF YGNPADAAQL SFPTGSSFEG 120 EDYGIQRQTA VDTTPSLTDL LAENSFTASN PYLSLYTTFQ AQMGSGNSTS LTNIKSERMT 180 TISGHDHCFN WPLAPHQSTP EATLEIEPSL YWNTLAAAGF GGGTLI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003633022.2 | 6e-42 | PREDICTED: dof zinc finger protein DOF1.4 | ||||
Refseq | XP_007025580.2 | 7e-42 | PREDICTED: dof zinc finger protein DOF1.4 | ||||
Refseq | XP_022724290.1 | 5e-42 | dof zinc finger protein DOF1.4-like | ||||
STRING | VIT_10s0003g00040.t01 | 1e-41 | (Vitis vinifera) | ||||
STRING | EOY28202 | 1e-41 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 8e-31 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo7G0022000 |