PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo7G0000300

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NAC

Protein Properties

Length: 378aa MW: 41447.7 Da PI: 8.2325

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo7G0000300	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.9	9.8e-54	19	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++ Spipo7G0000300 19 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-AIIAEVDLYKFDPWELPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKAILTS 112 79**************************.88***********988899***********************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy g+ pkg kt+W+mheyrl Spipo7G0000300 113 gGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 146 77788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-64	14	182	IPR003441	NAC domain
PROSITE profile	PS51005	61.673	19	182	IPR003441	NAC domain
Pfam	PF02365	3.6E-28	20	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MGSADTSLPG SLQQLHPQLP PGFRFHPTDE ELVVHYLKKK AASAPLPVAI IAEVDLYKFD 60 PWELPEKATF GEQEWYFFSP RDRKYPNGAR PNRAATSGYW KATGTDKAIL TSGGTQKVGV 120 KKALVFYGGK PPKGIKTNWI MHEYRLADSG SPKAPHPGDA PGIKNNGSLR LDDWVLCRIY 180 KKNCSGNPKL VEGDREEDGA GENILRALRL PLLSHQPASS CPNQMLLQSD KYDGTAVNYA 240 NLLDNEDNFI EGLLAAGGIP TYPAPRLTLQ RDHPEFSLPP DSTRMLPLKR WNEESLVTPL 300 TRKRFQSGSS SSGENNDSDG HGCASGNEAN HSMMALLGQI PHQCAPPYNH HHSAVLPALG 360 ESVFRHPQHF PGLRRGP*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MGSADTSLPG SLQQLHPQLP PGFRFHPTDE ELVVHYLKKK AASAPLPVAI IAEVDLYKFD  60
PWELPEKATF GEQEWYFFSP RDRKYPNGAR PNRAATSGYW KATGTDKAIL TSGGTQKVGV  120
KKALVFYGGK PPKGIKTNWI MHEYRLADSG SPKAPHPGDA PGIKNNGSLR LDDWVLCRIY  180
KKNCSGNPKL VEGDREEDGA GENILRALRL PLLSHQPASS CPNQMLLQSD KYDGTAVNYA  240
NLLDNEDNFI EGLLAAGGIP TYPAPRLTLQ RDHPEFSLPP DSTRMLPLKR WNEESLVTPL  300
TRKRFQSGSS SSGENNDSDG HGCASGNEAN HSMMALLGQI PHQCAPPYNH HHSAVLPALG  360
ESVFRHPQHF PGLRRGP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-75	19	187	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-75	19	187	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-75	19	187	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-75	19	187	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-75	19	187	20	173	NAC domain-containing protein 19
3swm_B	1e-75	19	187	20	173	NAC domain-containing protein 19
3swm_C	1e-75	19	187	20	173	NAC domain-containing protein 19
3swm_D	1e-75	19	187	20	173	NAC domain-containing protein 19
3swp_A	1e-75	19	187	20	173	NAC domain-containing protein 19
3swp_B	1e-75	19	187	20	173	NAC domain-containing protein 19
3swp_C	1e-75	19	187	20	173	NAC domain-containing protein 19
3swp_D	1e-75	19	187	20	173	NAC domain-containing protein 19
4dul_A	1e-75	19	187	17	170	NAC domain-containing protein 19
4dul_B	1e-75	19	187	17	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00058	PBM	Transfer from AT1G61110	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010268761.1	1e-120	PREDICTED: NAC transcription factor 56-like
Swissprot	A0SPJ9	3e-96	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A1U8AZX0	1e-119	A0A1U8AZX0_NELNU; NAC transcription factor 56-like
STRING	XP_010268761.1	1e-120	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7572	36	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	5e-96	NAC domain containing protein 25

Link Out ? help Back to Top
Phytozome	Spipo7G0000300

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]