PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0056600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 411aa    MW: 45311.8 Da    PI: 7.1331
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0056600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.81.7e-52561841128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+ +yL+k++++ ++++ ++i+evdiyk++PwdLp k+  +ekewyfFs+rd+ky++g r+nra+ sgyWkatg+dk +++ 
  Spipo6G0056600  56 LPPGFRFHPTDEELILHYLRKRAASLPCPV-SIIAEVDIYKFNPWDLPDKAVYGEKEWYFFSPRDRKYPNGMRPNRAAGSGYWKATGTDKVIVAP 149
                     79****************************.89***************7666789**************************************99 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++e +g+kk Lvfykgr pkg kt+W+mheyrl
  Spipo6G0056600 150 phGNESIGVKKALVFYKGRPPKGMKTSWIMHEYRL 184
                     988999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-6549219IPR003441NAC domain
PROSITE profilePS5100561.31356219IPR003441NAC domain
PfamPF023652.0E-2657184IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MEKKRKTATR GGQLMRDSQI DPAAAMESEK GGTATVFSDS DEAAGDKNMT IQETQLPPGF  60
RFHPTDEELI LHYLRKRAAS LPCPVSIIAE VDIYKFNPWD LPDKAVYGEK EWYFFSPRDR  120
KYPNGMRPNR AAGSGYWKAT GTDKVIVAPP HGNESIGVKK ALVFYKGRPP KGMKTSWIMH  180
EYRLTQTAAT AAAHNRPVKP TRESSMRLDD WVLCRIYNKG NNLPSTSADH VYEDSNVENA  240
YFPPPETGAI SERLPKCLSF GDLLEESDYS LLARMLGDNP SHVSVPDAEP LMGYENPNEN  300
HSYGGHGGAM RFPPPKSATP MDSPASAVGI CLKRERTAAE FEEEADYISC PGKRSTSSSH  360
TCYNNFAGQA GITVPHYDSV SSPFQLRQTL FNSQIGHQLP PAGQGSRFGL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-705322112170Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922870.11e-107NAC domain-containing protein 2
TrEMBLA0A1D1Z9K11e-115A0A1D1Z9K1_9ARAE; NAC domain-containing protein 29
STRINGXP_008793367.11e-102(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.17e-92NAC domain containing protein 47