PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo6G0056200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | Dof | ||||||||
Protein Properties | Length: 405aa MW: 41981.9 Da PI: 6.2638 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.9 | 1.2e-39 | 117 | 176 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s+ntkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Spipo6G0056200 117 PDKILPCPRCNSSNTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSS 176 7899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-29 | 114 | 174 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.3E-32 | 119 | 175 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.031 | 121 | 175 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 123 | 159 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MREVRDPTLK LFGRAIPVPE AQGEAAEKPG SPAGSAAVED KNASGETVSS EAEAMEFEKR 60 EEEADYSELD ASSTVCCENE DSPKVEEEGE TAMAEPMAGQ GKAKNLKGEG KVALKKPDKI 120 LPCPRCNSSN TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT MRNVPVGAGR RKNKSSALHS 180 RHGGAAKPAA AAAAAVARPA PSGDNAGEPS CASSSLTAST GLEGELLDGE EQAAGVLHGG 240 AAGLPPPPPP PPVHCYPWPV GWNGAAATPA AVPFPLLPAF FWSCMSAWPA SPAWTAAPWA 300 GPSSPAAAPP SSSACTAAGK VAETSSIWVP KTLRIDDPDE AAKSSIWATL GINPDPKIRS 360 GGIFRGFDSK SAAAAADRRP LEGIQAPHVN PAALSRSQAF KEST* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010922885.1 | 5e-88 | cyclic dof factor 1 | ||||
TrEMBL | A0A1D1Y6W1 | 1e-101 | A0A1D1Y6W1_9ARAE; Dof zinc finger protein DOF3.3 (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1434 | 38 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 5e-41 | cycling DOF factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Spipo6G0056200 |