PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo6G0050000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | TALE | ||||||||
Protein Properties | Length: 149aa MW: 16708.1 Da PI: 10.4181 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.1 | 4e-10 | 83 | 116 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp+ ee+++LA+ +gL+++q+ +WF N+R ++ Spipo6G0050000 83 WPYPTDEEKAKLAEVTGLDQKQINNWFINQRKRH 116 59*****************************985 PP | |||||||
2 | ELK | 24.5 | 6.5e-09 | 37 | 56 | 2 | 21 |
ELK 2 LKhqLlrKYsgyLgsLkqEF 21 LK+ L++KYs yL++L++E+ Spipo6G0050000 37 LKETLMKKYSNYLSNLRKEL 56 9******************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01188 | 0.0016 | 36 | 57 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.708 | 36 | 56 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.2E-5 | 37 | 56 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.568 | 56 | 119 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.25E-19 | 58 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 8.5E-12 | 58 | 123 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.12E-12 | 60 | 120 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-28 | 61 | 120 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.3E-18 | 76 | 115 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 94 | 117 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MAGRAAKGVG DASEEKLNCT DPTKKGGGGI WTGGQHLKET LMKKYSNYLS NLRKELQKNR 60 KKGNLPKGAR ALLMDWWTKH YQWPYPTDEE KAKLAEVTGL DQKQINNWFI NQRKRHWKPS 120 EGMRSTLVDG ITGGSHSTTW CFGMALGQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024456722.1 | 3e-50 | homeobox protein knotted-1-like 1 isoform X1 | ||||
Swissprot | A2Y007 | 1e-39 | KNOSA_ORYSI; Homeobox protein knotted-1-like 10 | ||||
Swissprot | Q7GDL5 | 1e-39 | KNOSA_ORYSJ; Homeobox protein knotted-1-like 10 | ||||
TrEMBL | A0A1D1Z1V5 | 1e-50 | A0A1D1Z1V5_9ARAE; Homeobox protein knotted-1-like 1 | ||||
STRING | POPTR_0005s01720.1 | 3e-49 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1698 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 4e-37 | KNOTTED-like from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Spipo6G0050000 |