PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0017100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 200aa    MW: 22484.4 Da    PI: 9.1226
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0017100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-163076146
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqk 46
                     rg+ T+eE++l++++++++G++  +W+ Iar+++ gRt++++k++w++
   Spipo6G0017100 30 RGNITPEEQLLILELHRRWGNRwnRWSQIARHLP-GRTDNEIKNYWRT 76
                     7999******************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.414124IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.9E-111036IPR009057Homeodomain-like
SuperFamilySSF466892.34E-211085IPR009057Homeodomain-like
PROSITE profilePS5129422.5342582IPR017930Myb domain
SMARTSM007172.5E-132980IPR001005SANT/Myb domain
PfamPF002491.4E-143076IPR001005SANT/Myb domain
CDDcd001672.51E-123476No hitNo description
Gene3DG3DSA:1.10.10.601.1E-173777IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRYPEGAGLK RTGKSCRLRW LNYLRPDVRR GNITPEEQLL ILELHRRWGN RWNRWSQIAR  60
HLPGRTDNEI KNYWRTRVQK HARQLRCDVN SEQFRHVMVQ LWTPRLTERI GGTGAPSAVG  120
ISRFGTEDSV TAGFPSNSPP RFPPPWSPPV AAFEPEKSCV VGDGAGGVCG DECFNQVLAG  180
CDLSPEGPWE GGGDIWLSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-15118040106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239882.19e-58transcription factor MYB78-like
RefseqXP_009402050.16e-58PREDICTED: transcription factor MYB108-like
SwissprotQ10MB41e-56MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A3Q7GN672e-56A0A3Q7GN67_SOLLC; Uncharacterized protein
TrEMBLB4FNP83e-56B4FNP8_MAIZE; Myb domain protein 112
STRINGSolyc05g053330.2.13e-57(Solanum lycopersicum)
STRINGGRMZM2G134279_P015e-57(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.13e-54myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]