PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo5G0075100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MYB | ||||||||
Protein Properties | Length: 215aa MW: 23760 Da PI: 9.9591 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ll ++++ +G g+W++ ++ g++R++k+c++rw++yl Spipo5G0075100 14 RGAWTSQEDKLLSEYIAAHGLGRWRSLPKNAGLNRCPKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.1e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE+el+++++++lG++ W++Ia +++ gRt++++k++w++ Spipo5G0075100 67 RGNVTEEEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTC 111 7888******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.652 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.46E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.833 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 68 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-25 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.44E-9 | 77 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MVRGGCSPQE GLKRGAWTSQ EDKLLSEYIA AHGLGRWRSL PKNAGLNRCP KSCRLRWLNY 60 LRPGIKRGNV TEEEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT CLRKKAAGDL 120 PKKHHPRCPS GGGDPDGGGA TAPPVIRTKA HRCTRFVVKN QVTDVAGDLP EPSIPVASAD 180 SGFRQNLYLQ VVSPPPLEFD VDGFFTHHGV QNSPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020244599.1 | 1e-72 | myb-related protein 308-like | ||||
Swissprot | Q9FJA2 | 2e-55 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | M0SID6 | 4e-70 | M0SID6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P27700_001 | 7e-71 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-57 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo5G0075100 |