PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Spipo5G0038000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 148aa MW: 15478.1 Da PI: 8.0757 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 35.8 | 1.3e-11 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCr+lL YPrG+ +V+Ca+C t+ Spipo5G0038000 7 CAGCRNLLLYPRGSANVCCAVCSTI 31 **********************997 PP | |||||||
2 | zf-LSD1 | 43.8 | 4.1e-14 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrt+L+Y rGA +VRCa+C+t+ Spipo5G0038000 46 CGGCRTPLMYARGAANVRCACCNTI 70 ***********************97 PP | |||||||
3 | zf-LSD1 | 42.2 | 1.3e-13 | 86 | 110 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg C+t+L YP+GApsV+Ca+C++V Spipo5G0038000 86 CGRCHTTLVYPYGAPSVKCAVCHFV 110 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.2E-11 | 4 | 33 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-9 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.4E-17 | 43 | 72 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.7E-12 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.1E-10 | 83 | 111 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.3E-13 | 86 | 110 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 148 aa Download sequence Send to blast |
MQSQLVCAGC RNLLLYPRGS ANVCCAVCST ITPVPTPGME MAQLVCGGCR TPLMYARGAA 60 NVRCACCNTI NLARAETPNQ MAHVNCGRCH TTLVYPYGAP SVKCAVCHFV TDVAAHGQTV 120 VVENPMSVDE TGKLVSNVVV GVTTEKK* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008804686.1 | 1e-73 | protein LSD1-like | ||||
Refseq | XP_008804687.1 | 1e-73 | protein LSD1-like | ||||
Swissprot | Q2QMB3 | 1e-58 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | A0A200QBG7 | 3e-74 | A0A200QBG7_9MAGN; Zinc finger protein | ||||
STRING | XP_008804686.1 | 5e-73 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20380.7 | 1e-57 | LSD family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Spipo5G0038000 |
Publications ? help Back to Top | |||
---|---|---|---|
|