PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo5G0029700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | TALE | ||||||||
Protein Properties | Length: 332aa MW: 37625.2 Da PI: 9.5459 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.6 | 5e-09 | 251 | 285 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ Spipo5G0029700 251 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 285 569*****************************885 PP | |||||||
2 | ELK | 38.4 | 2.5e-13 | 205 | 226 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLg+LkqEF+ Spipo5G0029700 205 ELKGQLLRKYSGYLGGLKQEFL 226 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.6E-7 | 86 | 135 | IPR005540 | KNOX1 |
Pfam | PF03790 | 8.0E-14 | 88 | 112 | IPR005540 | KNOX1 |
Pfam | PF03789 | 7.5E-10 | 205 | 226 | IPR005539 | ELK domain |
SMART | SM01188 | 3.9E-7 | 205 | 226 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.877 | 205 | 225 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.795 | 225 | 288 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-12 | 227 | 292 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-19 | 227 | 295 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.07E-13 | 228 | 288 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-28 | 230 | 291 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.5E-17 | 245 | 284 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 263 | 286 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MEGLSSSGVM GFAEGGGSGG LSPLMIMPLM ASQPASAEHN LLFLPPPTNH HHAGGSKGNH 60 HRQNTENNNV RYPSSYPSAM DEKDRINMKA KIMCHPHYPR LLSAYVNCHK VGKAKEEDEG 120 RCLGFVDEKM KRWEGDRVDD QRGISRSLLS KIDLRILCQT WKCQHLRSLV ILFPMGMSSW 180 PGVISVTAMA MELECDCGWA LQDRELKGQL LRKYSGYLGG LKQEFLKRRK KGKLPKEARY 240 QLLDWWNRHY KWPYPSESQK LALAESTGLD QKQINNWFIN QRKRHWKPAE EMQFVAAAAE 300 AGRPHYYLDN PLGSPFSVGF GPPFSEVQRP M* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012444605.1 | 6e-82 | PREDICTED: homeobox protein SBH1-like | ||||
Swissprot | P46608 | 2e-63 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | A0A0D2TLX0 | 1e-80 | A0A0D2TLX0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G181500.1 | 2e-81 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP21073 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 3e-62 | KNOX/ELK homeobox transcription factor |
Link Out ? help Back to Top | |
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Phytozome | Spipo5G0029700 |
Publications ? help Back to Top | |||
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