PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0019200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family G2-like
Protein Properties Length: 109aa    MW: 12219.1 Da    PI: 10.1514
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0019200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.41.9e-344397155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprlrWt +LHerFv+av+qLGG+ekAtPkti+++m+vkgLtl h+kSHLQkYRl
  Spipo5G0019200 43 KPRLRWTADLHERFVDAVAQLGGPEKATPKTIMRTMGVKGLTLFHLKSHLQKYRL 97
                    79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.96140100IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-324098IPR009057Homeodomain-like
SuperFamilySSF466892.87E-174299IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-254398IPR006447Myb domain, plants
PfamPF002493.7E-94596IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
FSGGRLPFSP QEEMFPGLIQ HQEAPIPQEE IRSPSLVLTA DPKPRLRWTA DLHERFVDAV  60
AQLGGPEKAT PKTIMRTMGV KGLTLFHLKS HLQKYRLGKQ SGKEMGEQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-204399258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-204399258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-204399157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-204399157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-204399157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-204399157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-204399258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-204399258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-204399258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-204399258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-204399258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-204399258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020583325.19e-58protein PHR1-LIKE 2-like isoform X2
SwissprotQ94A576e-40PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A2I0WUB81e-56A0A2I0WUB8_9ASPA; Myb family transcription factor APL
STRINGGSMUA_Achr1P19430_0014e-53(Musa acuminata)
STRINGGSMUA_Achr3P11980_0016e-53(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34273873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.13e-42G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]