PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo5G0019100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

G2-like

Protein Properties

Length: 197aa MW: 21703.7 Da PI: 9.7645

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo5G0019100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.7	5.4e-33	22	76	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt eLH rFv+a++qLGG+++AtPk il++m+vkgLt++h+kSHLQkYRl Spipo5G0019100 22 KQRLRWTDELHGRFVDAITQLGGPDRATPKGILRVMGVKGLTIYHIKSHLQKYRL 76 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.301	19	79	IPR017930	Myb domain
SuperFamily	SSF46689	2.87E-18	20	76	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-32	20	77	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.4E-26	22	76	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-7	24	75	IPR001005	SANT/Myb domain
Pfam	PF14379	5.6E-11	112	142	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MWRNATEPRN GLNLPNPPLS SKQRLRWTDE LHGRFVDAIT QLGGPDRATP KGILRVMGVK 60 GLTIYHIKSH LQKYRLASYV PECSSDGRKA GNKEHGEEIC HLDDSSIPIT EALKLQMEVQ 120 RQLQLRIEAQ GKYLQRIIEE QRRLSSVLTE GPGSTGNGKC VITSPASQRL DLGPEDKSGQ 180 RSQAGSFPGL VNSPLT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	8e-23	22	79	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-23	22	79	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-23	22	79	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-23	22	79	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006449962.1	2e-68	myb family transcription factor PHL7 isoform X1
Refseq	XP_006467243.1	3e-68	myb family transcription factor PHL7 isoform X1
Refseq	XP_024951354.1	3e-68	myb family transcription factor PHL7 isoform X1
Swissprot	Q9SJW0	6e-63	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A1D1YRS5	1e-71	A0A1D1YRS5_9ARAE; Myb family transcription factor APL
STRING	Lus10038734	9e-69	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2220	38	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	3e-64	G2-like family protein

Link Out ? help Back to Top
Phytozome	Spipo5G0019100