PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo5G0007300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | CO-like | ||||||||
Protein Properties | Length: 368aa MW: 39455 Da PI: 5.0644 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.2 | 5.9e-07 | 4 | 35 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 r C+ + ++ lfC+ + +lC C + H g Spipo5G0007300 4 RECDFCRGSPALLFCRADAAFLCGGCDAKVH-G 35 78*************************9999.4 PP | |||||||
2 | zf-B_box | 23.4 | 1.3e-07 | 46 | 88 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 + C+ +e+ ++ C+ + lC +C +H+ H + Spipo5G0007300 46 VWLCEVCEQAPAAVTCKADAAALCVSCDADIHSAnplarrHHR 88 679*****************************65788888655 PP | |||||||
3 | CCT | 70.1 | 5.6e-24 | 289 | 332 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k+ Spipo5G0007300 289 REARLMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRG 332 9****************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.584 | 1 | 48 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.8E-13 | 1 | 48 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.4E-5 | 4 | 35 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.18E-8 | 6 | 48 | No hit | No description |
PROSITE profile | PS50119 | 10.267 | 44 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.2E-5 | 46 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.37E-9 | 47 | 91 | No hit | No description |
SMART | SM00336 | 6.7E-8 | 49 | 91 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.896 | 289 | 331 | IPR010402 | CCT domain |
Pfam | PF06203 | 5.4E-18 | 289 | 331 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MGARECDFCR GSPALLFCRA DAAFLCGGCD AKVHGANKLA SRHARVWLCE VCEQAPAAVT 60 CKADAAALCV SCDADIHSAN PLARRHHRLP VAPFYDTPTA AALINPANPP AAGAAVAAEL 120 LLKPSSSLSD DDDDDDDDNQ SEEAEAASWL LPDPEPLASE EGHRLHHLHL HHQQKVEEVE 180 EEELKTSDYL SEEYPYLDLE YPSSVDAAMD SVVPEQMPAA GLVAGHPAAF ISPDGGIDFD 240 FGMSKPHLHG IYPSASCISH SFSSSEVGVV PDAGAGVDVT NPYGGRVDRE ARLMRYREKR 300 KNRRFEKTIR YASRKAYAET RPRIKGRFAK RGEREGDVAG IYSSGNPAAA TAAAFMVDPG 360 YGVVPSL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008789696.1 | 1e-114 | zinc finger protein CONSTANS-LIKE 4 | ||||
Swissprot | Q940T9 | 1e-80 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A1D1ZJJ7 | 1e-121 | A0A1D1ZJJ7_9ARAE; Zinc finger protein CONSTANS-LIKE 4 | ||||
STRING | XP_008789696.1 | 1e-113 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2191 | 32 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 3e-72 | CONSTANS-like 4 |
Link Out ? help Back to Top | |
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Phytozome | Spipo5G0007300 |