PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0007300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family CO-like
Protein Properties Length: 368aa    MW: 39455 Da    PI: 5.0644
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0007300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.25.9e-07435436
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                    r C+ +   ++ lfC+ +  +lC  C  + H g
  Spipo5G0007300  4 RECDFCRGSPALLFCRADAAFLCGGCDAKVH-G 35
                    78*************************9999.4 PP

2zf-B_box23.41.3e-074688339
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     + C+ +e+ ++   C+ +   lC +C   +H+       H +
  Spipo5G0007300 46 VWLCEVCEQAPAAVTCKADAAALCVSCDADIHSAnplarrHHR 88
                    679*****************************65788888655 PP

3CCT70.15.6e-24289332144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k+ 
  Spipo5G0007300 289 REARLMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRG 332
                     9****************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.584148IPR000315B-box-type zinc finger
SMARTSM003363.8E-13148IPR000315B-box-type zinc finger
PfamPF006431.4E-5435IPR000315B-box-type zinc finger
CDDcd000215.18E-8648No hitNo description
PROSITE profilePS5011910.2674491IPR000315B-box-type zinc finger
PfamPF006431.2E-54690IPR000315B-box-type zinc finger
CDDcd000214.37E-94791No hitNo description
SMARTSM003366.7E-84991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.896289331IPR010402CCT domain
PfamPF062035.4E-18289331IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGARECDFCR GSPALLFCRA DAAFLCGGCD AKVHGANKLA SRHARVWLCE VCEQAPAAVT  60
CKADAAALCV SCDADIHSAN PLARRHHRLP VAPFYDTPTA AALINPANPP AAGAAVAAEL  120
LLKPSSSLSD DDDDDDDDNQ SEEAEAASWL LPDPEPLASE EGHRLHHLHL HHQQKVEEVE  180
EEELKTSDYL SEEYPYLDLE YPSSVDAAMD SVVPEQMPAA GLVAGHPAAF ISPDGGIDFD  240
FGMSKPHLHG IYPSASCISH SFSSSEVGVV PDAGAGVDVT NPYGGRVDRE ARLMRYREKR  300
KNRRFEKTIR YASRKAYAET RPRIKGRFAK RGEREGDVAG IYSSGNPAAA TAAAFMVDPG  360
YGVVPSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789696.11e-114zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T91e-80COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A1D1ZJJ71e-121A0A1D1ZJJ7_9ARAE; Zinc finger protein CONSTANS-LIKE 4
STRINGXP_008789696.11e-113(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.13e-72CONSTANS-like 4