PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0006900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 277aa    MW: 31174.8 Da    PI: 6.2338
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0006900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-123981246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     g +++eEd l+ ++    G++ W+ Ia+ ++ gRt++++k++w++
   Spipo5G0006900 39 GGFSEEEDNLISNLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 81
                     569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-101844IPR009057Homeodomain-like
SuperFamilySSF466891.0E-201887IPR009057Homeodomain-like
PROSITE profilePS500904.0771932IPR017877Myb-like domain
PROSITE profilePS5129421.223387IPR017930Myb domain
SMARTSM007174.8E-113785IPR001005SANT/Myb domain
PfamPF002495.2E-113981IPR001005SANT/Myb domain
CDDcd001672.08E-84183No hitNo description
Gene3DG3DSA:1.10.10.604.6E-184584IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MFFYITNSNP FEECPGLKRC GKSCRLRWLN YLRPNIRHGG FSEEEDNLIS NLYISIGSRW  60
SIIAAQLPGR TDNDIKNYWN TKLKKKLLGR CKEPQASGSP SSSQESMESG NCEGLPRGLC  120
ASALERMQLH VQLHGLHGSS LLNEPALWHK FQHLSHRVLS IQHLSHEDTT NADEPVQRQI  180
GTSSTMESLP SQPEFMVENT LGDIESSSVN GVCSPSRSIA FNMDFGSFRK TDGGRERTIW  240
WADNGIDEQL STSSWYSTSA MQPETIFQEY LLGYDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-17198740108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008778085.18e-71transcription factor MYB36-like
SwissprotQ9FKL27e-55MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A2H3X4872e-69A0A2H3X487_PHODC; transcription factor MYB36-like
STRINGXP_008778085.13e-70(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.17e-55myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]