PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo5G0005200

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

MYB

Protein Properties

Length: 1030aa MW: 113113 Da PI: 6.0238

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo5G0005200	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.8	1.6e-15	86	127	1	43
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 +g+W++eEd +++ v+++G++ W+tIa+ ++ gR +kqc++r Spipo5G0005200 86 KGPWSKEEDNMIIEMVNKHGPKKWSTIAQALP-GRIGKQCRER 127 79****************************.******98 PP
2	Myb_DNA-binding	45.7	1.5e-14	171	213	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W++eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ Spipo5G0005200 171 KEAWSQEEELSLIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 213 579*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.728	34	80	IPR017877	Myb-like domain
SMART	SM00717	0.88	38	82	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.2E-10	40	88	IPR009057	Homeodomain-like
CDD	cd00167	0.00176	42	80	No hit	No description
PROSITE profile	PS51294	23.746	81	136	IPR017930	Myb domain
SuperFamily	SSF46689	4.77E-24	83	133	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-13	85	134	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-14	86	127	IPR001005	SANT/Myb domain
CDD	cd00167	5.38E-13	88	127	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.6E-23	89	127	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.6E-21	161	220	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.203	166	220	IPR017930	Myb domain
SuperFamily	SSF46689	4.77E-24	167	212	IPR009057	Homeodomain-like
SMART	SM00717	9.1E-14	170	218	IPR001005	SANT/Myb domain
Pfam	PF00249	7.3E-13	171	214	IPR001005	SANT/Myb domain
CDD	cd00167	1.41E-10	173	213	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1030 aa Download sequence Send to blast
MGSGEMTGGA ASHEESNVRC QKPRPFRGRT SGPTRRSTKG HWTPEEFDAK ATHLIRRKNL 60 SECFKDRTDV QCLHRWQKVL NPELVKGPWS KEEDNMIIEM VNKHGPKKWS TIAQALPGRI 120 GKQCRERSRV RVKTTWKSLN ISDCNILEEY LVVLGHLRLQ WHNHLNPAIN KEAWSQEEEL 180 SLIRAHQIYG NKWAELTKFL PGRTDNAIKN HWNSSVKRKM ESYIASGLLG EVQGLSQIEC 240 SNECVSASSA KKQESCSEGA LNDGVESVEA SECSERSARL GCGLLDSEET AESPTFTDRH 300 NRVGENTCEI KVENPHSAFS YKEYYASSCA RGMQYSTRMV EELSAEDILP DPCITGYEPD 360 QSGSQDLSRM STRQEAEVSP RVSRTLKLYA LQFGEAREYS NTVSFLDSVL DTSICLEKDS 420 DICDKQDQLT SEVDCQNKNL VEASSHLASS MGAYYSGSNN ICLNCPAGSR NCQFNGQSGG 480 TYDGLCNLVS SLDMLSIPCS QSILSEVPIP IVRPINGREA SAKDLEDDGR SPEAGGVVNS 540 ASGFSHTRRT AIPCGFTQKY SSGENCEDEV DSTVNTMKVI SVSSQDINGL RSSSGEKQST 600 PREDQHLGTS FDEQPGFPKQ EVPFVSCDLM SSRHEQQSYS PLGVRQLMIP STSCLTPYKL 660 WDSPSSDDSP DAVIKSAAKS FLYTPSIMKK RQRELLSPLH KQRNNKKSGK ESRHELGTSS 720 VKENGCFQMD VMSDENGSCV ASFSSTSRTI FSSSCYQKNN PVAFPDKKKN LVDGVGKDGS 780 QVLGTIEMIS NNNQRKREPV GHDLDGRKGI NVDKGSDTGG ILVEHSINDM QFFQSCDENI 840 DISLKMAVAE NLIGVYRRFM STPGIKRGIE SPSAWKSPWF MTTLLPGSKF ERYGCFMSPR 900 DRALDAVDLM RMLNEPDGAA PAEAHGASPR GSVQTPSTSQ REERPSTTDQ TAGGEQENPC 960 SLPRDISLLS SRRRGVFLIS ADAAARRPGS LEEQLQAPSA ASDEGPAVDA ASPPVAKSTV 1020 DLPDLGVGL*

Sequence ? help Back to Top

Protein Sequence Length: 1030 aa Download sequence Send to blast

MGSGEMTGGA ASHEESNVRC QKPRPFRGRT SGPTRRSTKG HWTPEEFDAK ATHLIRRKNL  60
SECFKDRTDV QCLHRWQKVL NPELVKGPWS KEEDNMIIEM VNKHGPKKWS TIAQALPGRI  120
GKQCRERSRV RVKTTWKSLN ISDCNILEEY LVVLGHLRLQ WHNHLNPAIN KEAWSQEEEL  180
SLIRAHQIYG NKWAELTKFL PGRTDNAIKN HWNSSVKRKM ESYIASGLLG EVQGLSQIEC  240
SNECVSASSA KKQESCSEGA LNDGVESVEA SECSERSARL GCGLLDSEET AESPTFTDRH  300
NRVGENTCEI KVENPHSAFS YKEYYASSCA RGMQYSTRMV EELSAEDILP DPCITGYEPD  360
QSGSQDLSRM STRQEAEVSP RVSRTLKLYA LQFGEAREYS NTVSFLDSVL DTSICLEKDS  420
DICDKQDQLT SEVDCQNKNL VEASSHLASS MGAYYSGSNN ICLNCPAGSR NCQFNGQSGG  480
TYDGLCNLVS SLDMLSIPCS QSILSEVPIP IVRPINGREA SAKDLEDDGR SPEAGGVVNS  540
ASGFSHTRRT AIPCGFTQKY SSGENCEDEV DSTVNTMKVI SVSSQDINGL RSSSGEKQST  600
PREDQHLGTS FDEQPGFPKQ EVPFVSCDLM SSRHEQQSYS PLGVRQLMIP STSCLTPYKL  660
WDSPSSDDSP DAVIKSAAKS FLYTPSIMKK RQRELLSPLH KQRNNKKSGK ESRHELGTSS  720
VKENGCFQMD VMSDENGSCV ASFSSTSRTI FSSSCYQKNN PVAFPDKKKN LVDGVGKDGS  780
QVLGTIEMIS NNNQRKREPV GHDLDGRKGI NVDKGSDTGG ILVEHSINDM QFFQSCDENI  840
DISLKMAVAE NLIGVYRRFM STPGIKRGIE SPSAWKSPWF MTTLLPGSKF ERYGCFMSPR  900
DRALDAVDLM RMLNEPDGAA PAEAHGASPR GSVQTPSTSQ REERPSTTDQ TAGGEQENPC  960
SLPRDISLLS SRRRGVFLIS ADAAARRPGS LEEQLQAPSA ASDEGPAVDA ASPPVAKSTV  1020
DLPDLGVGL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	7e-54	39	220	6	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	7e-54	39	220	6	159	MYB PROTO-ONCOGENE PROTEIN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2495	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	6e-83	Homeodomain-like protein

Link Out ? help Back to Top
Phytozome	Spipo5G0005200