PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo5G0004100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 156aa MW: 18291.8 Da PI: 6.5129 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.4 | 1.5e-10 | 40 | 91 | 2 | 53 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +k+ ++t+e Le++F+ +++++ ++++eLA++l+L rq+ vW + +R+ Spipo5G0004100 40 KKKLRLTREHSAMLERVFRTQSTITNTMKRELADRLNLHPRQIEVWNKLKRM 91 788899****************************************777776 PP | |||||||
2 | HD-ZIP_I/II | 64.1 | 3.4e-21 | 40 | 124 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl++e +++LE+ F+++++++++ K ela +L+l+prq++vW k+k++E++ye +k+++++l+ en++L++e +++r+ ++ Spipo5G0004100 40 KKKLRLTREHSAMLERVFRTQSTITNTMKRELADRLNLHPRQIEVW-------NKLKRMEVNYELMKKCFERLSCENQQLKEELKKMRSMIT 124 59********************************************.......589*******************************98775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-10 | 29 | 91 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.89E-9 | 31 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.823 | 36 | 96 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.6E-4 | 38 | 100 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.97E-6 | 40 | 92 | No hit | No description |
Pfam | PF00046 | 7.5E-8 | 40 | 91 | IPR001356 | Homeobox domain |
SMART | SM00340 | 2.9E-4 | 89 | 132 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MDQGREKDQC LWRSSLSTAS EDEDEDIVNA EPSEAGGENK KKLRLTREHS AMLERVFRTQ 60 STITNTMKRE LADRLNLHPR QIEVWNKLKR MEVNYELMKK CFERLSCENQ QLKEELKKMR 120 SMITSSVCPS CQRLREELHR MDECSLSTDI HVDNT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020081077.1 | 2e-23 | homeobox-leucine zipper protein HAT14-like | ||||
Refseq | XP_020099545.1 | 3e-23 | homeobox-leucine zipper protein HAT14-like | ||||
Swissprot | A2Z1U1 | 5e-21 | HOX11_ORYSI; Homeobox-leucine zipper protein HOX11 | ||||
Swissprot | Q67UE2 | 1e-20 | HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11 | ||||
STRING | Gorai.007G057100.1 | 4e-22 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-22 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Spipo5G0004100 |