PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo5G0004000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 149aa MW: 17184.7 Da PI: 10.5171 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 37.8 | 3.2e-12 | 85 | 112 | 29 | 56 |
HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 29 ereeLAkklgLterqVkvWFqNrRakek 56 +++eLA+ l+L rqV vWFqNrRa+ k Spipo5G0004000 85 QKQELADLLNLRPRQVEVWFQNRRARTK 112 79************************98 PP | |||||||
2 | HD-ZIP_I/II | 79.8 | 4.2e-26 | 83 | 146 | 26 | 89 |
HD-ZIP_I/II 26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 + +K+ela L+l+prqv+vWFqnrRARtk+kq E d+e+Lk+ +++l+een++L+++ +eLr+ Spipo5G0004000 83 TMQKQELADLLNLRPRQVEVWFQNRRARTKLKQKELDCEFLKKYCESLREENRQLREQLQELRS 146 469***********************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0024 | 77 | 118 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.07E-10 | 84 | 116 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.2E-9 | 85 | 112 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.19E-7 | 85 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-11 | 85 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.293 | 85 | 114 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 89 | 112 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.0E-4 | 114 | 148 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MGGQEPFDTR LALGVGGDAD VLVARKRKRP MQFHILLPSH TAEEPGRSWR EDQGPGRLML 60 RGDAGDKSTD ADGTGTRKKL RLTMQKQELA DLLNLRPRQV EVWFQNRRAR TKLKQKELDC 120 EFLKKYCESL REENRQLREQ LQELRSVK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 75 | 81 | TRKKLRL |
2 | 106 | 114 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026660422.1 | 2e-30 | homeobox-leucine zipper protein HAT9-like | ||||
Swissprot | P46604 | 5e-27 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A443N9U4 | 6e-33 | A0A443N9U4_9MAGN; Homeobox domain-containing protein | ||||
STRING | XP_009592889.1 | 3e-28 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 2e-22 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo5G0004000 |
Publications ? help Back to Top | |||
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