PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo4G0113500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25554.1 Da PI: 8.4652 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.4 | 3.4e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kR+ngi+KKA+E+SvLC+a+v +++fss+gk+ e++s Spipo4G0113500 9 KRIENSTNRQVTFTKRKNGIIKKAKEISVLCNAQVYLVLFSSSGKMAEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 51.5 | 4.4e-18 | 72 | 133 | 2 | 63 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslk 63 qk++g++ ++ak+e+l+ e++++kke++++q e+R+l+Ged+ +Ls eL Le L+++l Spipo4G0113500 72 QKYTGNRIWDAKHERLNAEIDQIKKENDSMQIELRRLKGEDIAPLSPYELIPLEATLQRGLD 133 7889999*****************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.5E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.67 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.13E-35 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-33 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.3E-10 | 83 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.195 | 84 | 181 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MGRGKIEIKR IENSTNRQVT FTKRKNGIIK KAKEISVLCN AQVYLVLFSS SGKMAEFCSD 60 NTTLSRMLEQ HQKYTGNRIW DAKHERLNAE IDQIKKENDS MQIELRRLKG EDIAPLSPYE 120 LIPLEATLQR GLDSPLEFEE TNPDAPFSSQ MEFLKKLKKN ERLLEAENKE LGMILEEHGG 180 ASRGGLRELH QYHRHPQESS YSFQTPFSFC GQPIRRGLDE GK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 4e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 4e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 4e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00080 | ChIP-seq | Transfer from AT5G20240 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020573549.1 | 2e-82 | MADS-box transcription factor 2 | ||||
Swissprot | Q0HA25 | 7e-74 | MADS9_VITVI; Agamous-like MADS-box protein MADS9 | ||||
TrEMBL | A0A1U8VH37 | 8e-96 | A0A1U8VH37_ANTAD; B-type MADS-box protein PI-1 | ||||
STRING | XP_008783315.1 | 2e-79 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3434 | 38 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 6e-57 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo4G0113500 |
Publications ? help Back to Top | |||
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