PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Spipo4G0102200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 282aa MW: 30146.2 Da PI: 8.4204 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++ G g+W+t ++ g+ R++k+c++rw +yl Spipo4G0102200 14 KGAWTKEEDQRLIAYIRANGEGCWRTLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 60.9 | 2.7e-19 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++++lG++ W++Ia +++ gRt++++k++w+++ Spipo4G0102200 67 RGNFTEEEDELIIKLHAMLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.239 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.31E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.04E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 29.606 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-28 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-18 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-17 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.07E-14 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 282 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLIAYIR ANGEGCWRTL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIK LHAMLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSRG 120 LDPQTHRPIG AVPAASMGVA AVAPRGLSFI ADAAKAAAAA AVKMAAESAE ERNGSAASME 180 DECSPGLNLE LSISLPFYAS KPSSSSTEAS SSMTTNTAAA TSDSTAAVAA AESAHKPYAQ 240 AICLCPNLGF QRSEACSCHG VSDPHAIRFF IPLQGGHHVL D* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-30 | 14 | 116 | 7 | 108 | B-MYB |
1h8a_C | 1e-29 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008799190.1 | 1e-116 | myb-related protein 308-like | ||||
Swissprot | P81393 | 2e-93 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A2H3YIW5 | 1e-114 | A0A2H3YIW5_PHODC; myb-related protein 308-like | ||||
STRING | XP_008799190.1 | 1e-115 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38620.1 | 6e-89 | myb domain protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Spipo4G0102200 |
Publications ? help Back to Top | |||
---|---|---|---|
|