PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo4G0100200

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NAC

Protein Properties

Length: 306aa MW: 34048.4 Da PI: 8.7079

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo4G0100200	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.6	1.8e-51	8	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtd+elv++yL++k++g+++ + +i+e+d+yk++PwdLp+++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + Spipo4G0100200 8 LPPGFRFHPTDDELVTHYLCRKCTGQTIAV-PIIAEIDLYKHNPWDLPRMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGT- 100 79************************99.88***********7666789*********************************99. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +kk Lvfy+g+apkgekt+W+mheyrl Spipo4G0100200 101 -PKPMAIKKALVFYSGKAPKGEKTNWIMHEYRL 132 .7789************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-60	3	158	IPR003441	NAC domain
PROSITE profile	PS51005	58.684	8	158	IPR003441	NAC domain
Pfam	PF02365	6.4E-27	9	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MSAGDLQLPP GFRFHPTDDE LVTHYLCRKC TGQTIAVPII AEIDLYKHNP WDLPRMALYG 60 EKEWYFFSPR DRKYPNGSRP NRAAGTGYWK ATGADKPIGT PKPMAIKKAL VFYSGKAPKG 120 EKTNWIMHEY RLADVDRTAR RKNSLRLDDW VLCRIYNKKG GAEKQMNADR RAAAASRGPL 180 LAPKPEMEGT AGPQPQQQPA SEFLYFDSDS LPRLHADSSS EQVLSSSPDF TYEREVQSEP 240 RWTEWNRPSS LDIAFSNADA MAAAGLAGGG SFSSLDGGLL GQLGQLSPLF QDSMPDVFKY 300 LHKPF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-79	2	164	9	174	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629774.1	1e-134	PREDICTED: NAC domain-containing protein 2
Refseq	XP_016481807.1	1e-134	PREDICTED: NAC domain-containing protein 2-like
Swissprot	Q39013	1e-124	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	A0A1S4AYR3	1e-133	A0A1S4AYR3_TOBAC; NAC domain-containing protein 2-like
STRING	XP_009629774.1	1e-133	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3417	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-116	NAC family protein

Link Out ? help Back to Top
Phytozome	Spipo4G0100200

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]