PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0098100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MIKC_MADS
Protein Properties Length: 192aa    MW: 21865.1 Da    PI: 9.2011
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0098100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.53.1e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvt+skR+ngi+KKA+E+S+LC+a+v +++fss+gk+ e++s
  Spipo4G0098100  9 KRIENSTNRQVTYSKRKNGIIKKAKEISILCNAKVYLVVFSSSGKMAEFCS 59
                    79***********************************************96 PP
2K-box67.35.3e-2358145996
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                      +++++++l+ e++++kke++++q e+Rhl+Ged+++Ls  eL  Le+ L+k+l  +R+k++e+l +  ++ +  e+e++++ + L++
  Spipo4G0098100  58 CSDSTTSRLNAEIERIKKENDSMQIELRHLKGEDITPLSPFELIPLEETLQKGLACVRDKQMEFLNQLKDNGRVLEEENKQIAMILQH 145
                     6788999**************************************************************************9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.375161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-29276IPR002100Transcription factor, MADS-box
CDDcd002651.03E-35282No hitNo description
PRINTSPR004044.5E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-1663139IPR002487Transcription factor, K-box
PROSITE profilePS5129712.95163149IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT YSKRKNGIIK KAKEISILCN AKVYLVVFSS SGKMAEFCSD  60
STTSRLNAEI ERIKKENDSM QIELRHLKGE DITPLSPFEL IPLEETLQKG LACVRDKQME  120
FLNQLKDNGR VLEEENKQIA MILQHHQIAW NGAIAREPDR DYRHSGRGDY SVQMPFSFCG  180
QPIQPNLQGN K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-15159159MEF2 CHIMERA
6byy_B5e-15159159MEF2 CHIMERA
6byy_C5e-15159159MEF2 CHIMERA
6byy_D5e-15159159MEF2 CHIMERA
6bz1_A6e-15159159MEF2 CHIMERA
6bz1_B6e-15159159MEF2 CHIMERA
6bz1_C6e-15159159MEF2 CHIMERA
6bz1_D6e-15159159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020679600.13e-82MADS-box transcription factor 2 isoform X1
RefseqXP_020679601.13e-82MADS-box transcription factor 2 isoform X2
SwissprotQ0HA253e-75MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A1D1XMT04e-91A0A1D1XMT0_9ARAE; Floral homeotic protein PMADS 2
STRINGXP_008783315.13e-76(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34343877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.15e-55MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]