PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo4G0096100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | NAC | ||||||||
Protein Properties | Length: 199aa MW: 22120.7 Da PI: 5.278 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 121.2 | 9.1e-38 | 8 | 125 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF P+deelvv++L++k+++ ++ +vi+++d+ +++PwdL+ k+ ++ ++wyfFs+r+ +r+ +sgyW tg +k+v+s Spipo4G0096100 8 LPPGFRFFPSDEELVVHFLRRKAAHLPCYP-DVIPSLDLRHYDPWDLNGKALSGGNQWYFFSRRAL--------SRVWASGYWTPTGVEKPVTS- 92 79*************************888.99**************97777899*******9865........69999***************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 g++vg+kk L+fy g+ap g kt+Wvmhey+l Spipo4G0096100 93 AGRNVGIKKYLAFYAGQAPVGIKTNWVMHEYHL 125 9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-47 | 7 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.687 | 8 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-23 | 9 | 125 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MGNGAGDLPP GFRFFPSDEE LVVHFLRRKA AHLPCYPDVI PSLDLRHYDP WDLNGKALSG 60 GNQWYFFSRR ALSRVWASGY WTPTGVEKPV TSAGRNVGIK KYLAFYAGQA PVGIKTNWVM 120 HEYHLLDCPG GTSADNRGRR PPRNGGNPEA DFNEWVLGRV YESDCGSQSS FYDDGTELSC 180 LDEVFLSLDD LDEISLPK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-42 | 8 | 169 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-42 | 8 | 169 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-42 | 8 | 169 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-42 | 8 | 169 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-42 | 8 | 169 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-42 | 8 | 169 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-42 | 8 | 169 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-42 | 8 | 169 | 20 | 174 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020107570.1 | 1e-88 | NAC domain-containing protein 104-like | ||||
Swissprot | Q8GWK6 | 2e-69 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A1D1YHZ2 | 6e-93 | A0A1D1YHZ2_9ARAE; NAC domain-containing protein 55 (Fragment) | ||||
STRING | MLOC_15681.2 | 7e-80 | (Hordeum vulgare) | ||||
STRING | LPERR02G16450.1 | 7e-80 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3667 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 2e-71 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Phytozome | Spipo4G0096100 |
Publications ? help Back to Top | |||
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