PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo4G0066500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MYB | ||||||||
Protein Properties | Length: 165aa MW: 18740.9 Da PI: 9.9292 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.5e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+l+ v +++ +W++++++ g+ R++k+c++rw +yl Spipo4G0066500 16 KGPWTHEEDEKLKAFVLAHPSTSWRLVPQKAGLIRCGKSCRLRWMNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.2 | 1.2e-15 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE+el+++++ G++ W+ Ia+ ++ gRt++++k+ w++ Spipo4G0066500 69 RGNFTQEEEELIIQLHSAVGNK-WSVIAAQLP-GRTDNEIKNLWNT 112 89********************.*********.**********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.976 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.36E-29 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-10 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-23 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.82E-9 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 23.779 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-13 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-14 | 69 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-26 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.63E-10 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MGRAPCCNGE HAGLKKGPWT HEEDEKLKAF VLAHPSTSWR LVPQKAGLIR CGKSCRLRWM 60 NYLRPDIRRG NFTQEEEELI IQLHSAVGNK WSVIAAQLPG RTDNEIKNLW NTKLRKILVL 120 KGINPMTHQP LCNPLLSDYV KQCLRSIEHM LISRFVGPPP LTGGE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 14 | 116 | 5 | 106 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021596793.1 | 1e-62 | transcription factor MYB102-like | ||||
Swissprot | Q9LDR8 | 5e-60 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A443N0L7 | 9e-91 | A0A443N0L7_9MAGN; Transcription factor MYB41-like protein | ||||
STRING | cassava4.1_028193m | 5e-62 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 2e-62 | MYB-like 102 |
Link Out ? help Back to Top | |
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Phytozome | Spipo4G0066500 |
Publications ? help Back to Top | |||
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