PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0059400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 233aa    MW: 25938.4 Da    PI: 9.2998
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0059400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.36.3e-49141381128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLk+kv   +l++ ++i+e+++ k++PwdLp +    e+e yfF  r+ ky++g+r+nra +sg+Wkatgkd++v+++
  Spipo4G0059400  14 LPPGFRFHPTDEELVVQYLKRKVFCCPLPA-SIIPEIGLSKYDPWDLPGC---PERERYFFNIREVKYPNGSRPNRASASGFWKATGKDRPVVAS 104
                     79****************************.89***************44...6789***********************************998 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kk Lvfy+g+ap+g++tdWvmheyrl
  Spipo4G0059400 105 rTNQVVGMKKALVFYRGKAPNGSRTDWVMHEYRL 138
                     67788***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-579173IPR003441NAC domain
PROSITE profilePS5100556.48814173IPR003441NAC domain
PfamPF023651.4E-2515138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEKPGCVRQG VVRLPPGFRF HPTDEELVVQ YLKRKVFCCP LPASIIPEIG LSKYDPWDLP  60
GCPERERYFF NIREVKYPNG SRPNRASASG FWKATGKDRP VVASRTNQVV GMKKALVFYR  120
GKAPNGSRTD WVMHEYRLAG SGSETCLFPQ RKNSTLSSVV RTEDWVLCRV FKKRRPAKVP  180
AGEEFGSFID RSGRRGAESR DPPESEPSCV TEASEEDSAG CEASSSRSQG EA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-541217815170NO APICAL MERISTEM PROTEIN
1ut4_B2e-541217815170NO APICAL MERISTEM PROTEIN
1ut7_A2e-541217815170NO APICAL MERISTEM PROTEIN
1ut7_B2e-541217815170NO APICAL MERISTEM PROTEIN
3swm_A3e-541217818173NAC domain-containing protein 19
3swm_B3e-541217818173NAC domain-containing protein 19
3swm_C3e-541217818173NAC domain-containing protein 19
3swm_D3e-541217818173NAC domain-containing protein 19
3swp_A3e-541217818173NAC domain-containing protein 19
3swp_B3e-541217818173NAC domain-containing protein 19
3swp_C3e-541217818173NAC domain-containing protein 19
3swp_D3e-541217818173NAC domain-containing protein 19
4dul_A2e-541217815170NAC domain-containing protein 19
4dul_B2e-541217815170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777977.11e-102NAC domain-containing protein 83-like
SwissprotQ9FY933e-73NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2H3X4021e-101A0A2H3X402_PHODC; NAC domain-containing protein 83-like
STRINGXP_008777977.11e-101(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-75NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]