PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo4G0055100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 152aa MW: 16975.7 Da PI: 10.5627 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.2 | 6e-25 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri++ +r v+fskRr g+lKKA EL vLCdaevav++fs++gkl +ss Spipo4G0055100 10 RIDDGARRMVSFSKRRSGLLKKARELAVLCDAEVAVVVFSPKGKLSHFSS 59 89*********************************************996 PP | |||||||
2 | K-box | 21.6 | 9.3e-09 | 89 | 133 | 36 | 80 |
K-box 36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 +ll ++L + +++eL +Le++Le+ l+kiR +K+ ll+++ +l Spipo4G0055100 89 LRLLDDGLIEHDVNELTKLEDKLESELRKIRLRKTALLKDSGANL 133 5666778888899*************************9986665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.291 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.33E-25 | 3 | 69 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.2E-5 | 91 | 135 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MVRGKVKLQR IDDGARRMVS FSKRRSGLLK KARELAVLCD AEVAVVVFSP KGKLSHFSSQ 60 SRCPADDTWA LFFKREEKAP SLGGHKNLLR LLDDGLIEHD VNELTKLEDK LESELRKIRL 120 RKTALLKDSG ANLHDPLAQL NGQMGTDLRK S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028072706.1 | 6e-29 | MADS-box protein SOC1-like isoform X1 | ||||
Swissprot | Q9XJ60 | 4e-26 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | A0A1D1XXJ4 | 7e-35 | A0A1D1XXJ4_9ARAE; MADS-box transcription factor 56 | ||||
STRING | cassava4.1_026051m | 7e-27 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 2e-28 | AGAMOUS-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Spipo4G0055100 |