PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo4G0054700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 209aa MW: 23770.3 Da PI: 9.5537 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.5 | 1.1e-25 | 23 | 72 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien+snrq+tfskRrng+lKKA ELS+LC++ev ++ifs tgk y yss Spipo4G0054700 23 RIENTSNRQITFSKRRNGLLKKACELSILCEVEVGLLIFSATGKSYQYSS 72 8***********************************************96 PP | |||||||
2 | K-box | 79.4 | 9e-27 | 111 | 194 | 14 | 97 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++++e++kL k +e+L+ q+h+ Ge+L sL ++e +qLe+q++ +l +iRs+K +++ e+i+ l+kk+kelqeen +L+++ Spipo4G0054700 111 LQYWRTEIDKLTKVVESLEARQKHFAGEELLSLGIREVKQLERQMKIGLDRIRSRKRKIISEHISSLKKKQKELQEENAYLHRR 194 699******************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-35 | 14 | 73 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.843 | 14 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.03E-31 | 15 | 72 | No hit | No description |
SuperFamily | SSF55455 | 4.58E-26 | 15 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-27 | 16 | 36 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-23 | 23 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-27 | 36 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-27 | 51 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.89 | 111 | 202 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.1E-23 | 112 | 194 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MGMVPEGPSR ACDMGRGKVQ LRRIENTSNR QITFSKRRNG LLKKACELSI LCEVEVGLLI 60 FSATGKSYQY SSHESVNLPN PSLTSPESSS LSLSLDLSLS LPPLDYGQYY LQYWRTEIDK 120 LTKVVESLEA RQKHFAGEEL LSLGIREVKQ LERQMKIGLD RIRSRKRKII SEHISSLKKK 180 QKELQEENAY LHRRETDMAC GLVIREDA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-18 | 14 | 74 | 1 | 61 | MEF2C |
5f28_B | 5e-18 | 14 | 74 | 1 | 61 | MEF2C |
5f28_C | 5e-18 | 14 | 74 | 1 | 61 | MEF2C |
5f28_D | 5e-18 | 14 | 74 | 1 | 61 | MEF2C |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016709013.1 | 2e-63 | PREDICTED: MADS-box transcription factor 23-like isoform X2 | ||||
TrEMBL | A0A1D1XEZ7 | 8e-69 | A0A1D1XEZ7_9ARAE; Floral homeotic protein APETALA 1 | ||||
STRING | Gorai.007G043400.1 | 3e-61 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP41745 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 5e-29 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo4G0054700 |