PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo4G0040200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | NAC | ||||||||
Protein Properties | Length: 388aa MW: 43275.8 Da PI: 6.2458 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.2 | 3.6e-32 | 57 | 199 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tk 79 lp+G++F+P+d elv e+L+ kv + + ++++ ++e +i++++P++Lp vk++ ++ +fF++++++y+tg+rk+r+ + Spipo4G0040200 57 LPAGVKFDPSDLELV-EHLAGKVGHGNskphvfIDEFIPtLEEDeGICYTHPENLP-GVKKDGSSAHFFHRTSNAYSTGHRKRRKiqnrfnlsDD 149 799************.99****998886766543332322444347**********.67788899*******************84555555444 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 + +W++tgk+++v++ +g + glkk++v+yk + k++kt+Wvmh+y+l Spipo4G0040200 150 HVRWHKTGKTRPVME-NGVQRGLKKIMVLYKSsrKGFKPVKTSWVMHQYHL 199 899************.99************6522556788*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-37 | 42 | 218 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.759 | 57 | 218 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-13 | 58 | 199 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MAKAWLINSR GLAKKVKNAT VFSKCAIKDL GTQAIRECPK CKHRVDNSDV SLEWPGLPAG 60 VKFDPSDLEL VEHLAGKVGH GNSKPHVFID EFIPTLEEDE GICYTHPENL PGVKKDGSSA 120 HFFHRTSNAY STGHRKRRKI QNRFNLSDDH VRWHKTGKTR PVMENGVQRG LKKIMVLYKS 180 SRKGFKPVKT SWVMHQYHLG TEEDEREGEL VVSKIFFQSP AKPPEEIAMD AAAPDELEKL 240 AAAVSPRTPK TSTPFPPRAA AKKCRFDEGD EDNNSIEISA AQQGSRPPFS DATKVNAPET 300 LDSDDLVISL MCDEVLDPLF PPEEPGRRSP PPCSWNEAPL GRDGWLSDFP DLDSIDTSTP 360 PDFNLADLQF GSQDSFMSWL DWMDMRP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008775622.1 | 1e-154 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 1e-86 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1D1XE08 | 0.0 | A0A1D1XE08_9ARAE; NAC domain-containing protein 8 | ||||
STRING | XP_008775622.1 | 1e-154 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 6e-89 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo4G0040200 |