PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo4G0026000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 26835.5 Da PI: 8.7441 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 98 | 143 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l +v ++G+ +W++Ia+++ gR++k+c++rw++ Spipo4G0026000 98 RGHWRPAEDAKLRVLVSLHGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 143 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56.7 | 5.4e-18 | 150 | 193 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l a++ +G++ W++Iar ++ gRt++ +k++w+ Spipo4G0026000 150 RRAFTEEEEEKLMAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHV 193 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.736 | 92 | 144 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-13 | 97 | 146 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 98 | 143 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.87E-28 | 98 | 191 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.7E-26 | 99 | 151 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.25E-12 | 101 | 142 | No hit | No description |
PROSITE profile | PS51294 | 27.346 | 145 | 199 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-15 | 149 | 197 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-15 | 150 | 192 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 152 | 198 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.40E-12 | 152 | 192 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MMAMKHVHSP QDMVFADMGT LSIDSSSSSL AGGGRVLGKD RPLGDTFPLF EVHREKAGDV 60 ASEDSSFIAI DETIASGMED PSSKKRIGEG TQPKLYARGH WRPAEDAKLR VLVSLHGPQN 120 WNLIAEKLEG RSGKSCRLRW FNQLDPRINR RAFTEEEEEK LMAAHRAYGN KWALIARLFP 180 GRTDNAVKNH WHVIMSRKTA MQERNLGGGD TPRLFPADGG GHAAVDPLCF WPLGLVVSGG 240 GHAV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-31 | 97 | 199 | 6 | 108 | B-MYB |
1mse_C | 2e-31 | 95 | 199 | 1 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-31 | 95 | 199 | 1 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008783843.1 | 9e-72 | transcription factor CSA-like | ||||
TrEMBL | A0A1D1XH33 | 5e-75 | A0A1D1XH33_9ARAE; Transcription factor MYB44 | ||||
STRING | XP_008783843.1 | 4e-71 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-64 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Spipo4G0026000 |