PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0022800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family G2-like
Protein Properties Length: 357aa    MW: 37796.4 Da    PI: 7.0952
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0022800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.41e-30126179155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Spipo3G0022800 126 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 179
                     59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.485123182IPR017930Myb domain
SuperFamilySSF466893.67E-20123183IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-31125184IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-24127179IPR006447Myb domain, plants
PfamPF002492.5E-8129178IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MREEESNWFA RWEEELPTPE ELMPISQSLI TPDLAQAFDI STTPTSPSSP TAHADNPNQA  60
SHLHPQQPST SPHLLSALHL HQETQSLHPS VHQPPPDFDP QELGGGGGAG AGSMNPGEEP  120
ARTLKRPRLV WTPQLHKRFV DAVAHLGIKN AVPKTIMQLM NVEGLTRENV ASHLQKYRLY  180
LKRVQGLSSP GGGAGAGGPV SAVDAATDRL FASGPVPRHF LSRAPPANVM VPGGGVCAPD  240
HQLMPFVPVS ALQHHQQMAA VAAAAAAAHQ QQQQQQQQYF HQRHMGHLGS PRGGGFEHGY  300
LSRPPQPPGV PQMMVPPGGA PIAPSPRGPS YAEGSDSGAA SGGGRKMLTL FPTGDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-33126182157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3575052e-59AK357505.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1055A13.
GenBankKC6682592e-59KC668259.1 Hordeum vulgare haplotype 1 LUX (LUX) gene, complete cds.
GenBankKC6682602e-59KC668260.1 Hordeum vulgare haplotype 2 LUX (LUX) gene, complete cds.
GenBankKC6682612e-59KC668261.1 Hordeum vulgare haplotype 3 LUX (LUX) gene, complete cds.
GenBankKC6682622e-59KC668262.1 Hordeum vulgare haplotype 4 LUX (LUX) gene, complete cds.
GenBankKC6682632e-59KC668263.1 Hordeum vulgare haplotype 5 LUX (LUX) gene, complete cds.
GenBankKC6682642e-59KC668264.1 Hordeum vulgare haplotype 6 LUX (LUX) gene, complete cds.
GenBankKC6682652e-59KC668265.1 Hordeum vulgare haplotype 7 LUX (LUX) gene, complete cds.
GenBankKC6682662e-59KC668266.1 Hordeum vulgare haplotype 8 LUX (LUX) gene, complete cds.
GenBankKC6682672e-59KC668267.1 Hordeum vulgare haplotype 9 LUX (LUX) gene, complete cds.
GenBankKC6682682e-59KC668268.1 Hordeum vulgare haplotype 10 LUX (LUX) gene, complete cds.
GenBankKC6682692e-59KC668269.1 Hordeum vulgare haplotype 11 LUX (LUX) gene, complete cds.
GenBankKC6682702e-59KC668270.1 Hordeum vulgare haplotype 12 LUX (LUX) gene, complete cds.
GenBankKC6682712e-59KC668271.1 Hordeum vulgare haplotype 13 LUX (LUX) gene, complete cds.
GenBankKC6682722e-59KC668272.1 Hordeum vulgare haplotype 14 LUX (LUX) gene, complete cds.
GenBankKC6682732e-59KC668273.1 Hordeum vulgare haplotype 15 LUX (LUX) gene, complete cds.
GenBankKC6682742e-59KC668274.1 Hordeum vulgare haplotype 16 LUX (LUX) gene, complete cds.
GenBankKF7694432e-59KF769443.1 Triticum aestivum cultivar Chinese Spring LUX-A gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019447122.11e-93PREDICTED: transcription factor PCL1-like
SwissprotO222105e-59MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A1D1YWA11e-122A0A1D1YWA1_9ARAE; Two-component response regulator ARR1
STRINGGSMUA_Achr8P05880_0017e-91(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.13e-57G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]