PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo3G0015700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MYB | ||||||||
Protein Properties | Length: 306aa MW: 33582.6 Da PI: 6.3931 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 9.8e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl Spipo3G0015700 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNAGLMRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.8 | 3.3e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l+v++ +lG++ W++Ia++++ Rt++++k++w+++l Spipo3G0015700 67 RGNFTPQEEGLIVQLQGLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.06 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.47E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.59E-12 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-24 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.952 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.1E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.15E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MGRPPCCEKV GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNAGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TPQEEGLIVQ LQGLLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKIKRLQ 120 AASGPSLALD STADTHPGRL IDSGGGTITN SDGNPALPRA GHCSSTYASS AENISRLLEG 180 WIRPSPKASG KPMQEWECNG SRNHGPVPLG GLQVGEDQGS CSILSQEDLD SLLSIENVAW 240 DESSTDYRHC GAHRENLVQA EMEQRLESQR PPLSLLEGWL LDETSVQDDR LTDTSPSVCI 300 NARCD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 8e-26 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 9e-26 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00132 | DAP | Transfer from AT1G08810 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021622445.1 | 1e-110 | myb-related protein 306-like | ||||
Swissprot | B3VTV7 | 1e-109 | MYB60_VITVI; Transcription factor MYB60 | ||||
TrEMBL | A0A2C9VAH6 | 1e-108 | A0A2C9VAH6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_031668m | 1e-109 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 2e-93 | myb domain protein 60 |
Link Out ? help Back to Top | |
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Phytozome | Spipo3G0015700 |
Publications ? help Back to Top | |||
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