PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo31G0012500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 547aa    MW: 60278.4 Da    PI: 4.496
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo31G0012500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.72.7e-54551812128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      ppGfrFhPtdeelv +yLk+k+ ++++++ ++i evd+yk+ePw+Lp k  +++++k+wyfFs++d+ky++g r+nratk+gyWk+tgkd+++ 
  Spipo31G0012500  55 PPGFRFHPTDEELVLYYLKRKICRRRIQM-DTIGEVDVYKCEPWELPeKsILQTGDKQWYFFSPKDRKYPNGWRSNRATKTGYWKTTGKDRAIS 147
                      8****************************.89**************95346778999************************************* PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + ++++vg+kktLvfy+grap+ge+t+Wvmhey++
  Spipo31G0012500 148 H-SSRVVGMKKTLVFYHGRAPRGERTNWVMHEYTM 181
                      9.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-6051204IPR003441NAC domain
PROSITE profilePS5100556.61454204IPR003441NAC domain
PfamPF023653.1E-2855180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MVVAAASGWG GGGAVPPVLG NESGEYGDED GGLAALLEDT AAEGEGRKQK RSRWPPGFRF  60
HPTDEELVLY YLKRKICRRR IQMDTIGEVD VYKCEPWELP EKSILQTGDK QWYFFSPKDR  120
KYPNGWRSNR ATKTGYWKTT GKDRAISHSS RVVGMKKTLV FYHGRAPRGE RTNWVMHEYT  180
MDEQELSHVR NAKDSFAVYK VYEKSGPGPR NGEQYGAPFR EEEWADEEPV DDTVTGPDDI  240
ESAPLAPPSL DVVATAQSKG DGSDLPMDEL EMLLMQAQND QGIDSQPANR RSDMLEITSE  300
AAVEAELMES RMLMAALVGA PPQNSHQAAV QPPETRQLTS DLDQFDPTQV DKVDDFLEIV  360
DLDDLMEPGL PPLEDFFYDP SEDFLDHMLL NPYQEGFNGL HEAQITTQLW EHDQVASLAP  420
PPGIGQHPQP VLQQEGDGEG GSGPWWSSIS TMLINSVPTK PAFASESEFV GRALERVSSF  480
RAGLARARDP GDQTGGAVRG RRNGEAPGGG LLFLSFLIAL GAVLWALTIS LVFKVLKALV  540
GRLISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-485520418165NO APICAL MERISTEM PROTEIN
1ut4_B4e-485520418165NO APICAL MERISTEM PROTEIN
1ut7_A4e-485520418165NO APICAL MERISTEM PROTEIN
1ut7_B4e-485520418165NO APICAL MERISTEM PROTEIN
3swm_A5e-485520421168NAC domain-containing protein 19
3swm_B5e-485520421168NAC domain-containing protein 19
3swm_C5e-485520421168NAC domain-containing protein 19
3swm_D5e-485520421168NAC domain-containing protein 19
3swp_A5e-485520421168NAC domain-containing protein 19
3swp_B5e-485520421168NAC domain-containing protein 19
3swp_C5e-485520421168NAC domain-containing protein 19
3swp_D5e-485520421168NAC domain-containing protein 19
4dul_A4e-485520418165NAC domain-containing protein 19
4dul_B4e-485520418165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008796460.11e-143NAC domain-containing protein 17-like
RefseqXP_026662323.11e-143NAC domain-containing protein 17-like
TrEMBLA0A1D1Y7V71e-156A0A1D1Y7V7_9ARAE; NAC domain-containing protein 78 (Fragment)
STRINGXP_008796459.11e-142(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1851269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.15e-89NAC domain containing protein 16