PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo30G0002600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family STAT
Protein Properties Length: 789aa    MW: 87902.9 Da    PI: 5.9513
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo30G0002600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT166.45.6e-522363521116
             STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklk 93 
                      ldv ll+a+g +v+++ e++asL+yad+g++v+k+ d+ eapLLi +dG+ef+s++r +kl+ Gras klkisqLsskc+nrLfri+f  p  +
  Spipo30G0002600 236 LDVALLDAFGFTVHREFELIASLVYADNGTAVKKPlDNGEAPLLIHCDGLEFPSTERTVKLIDGRASVKLKISQLSSKCENRLFRIHFYAPGAQ 329
                      89*********************************9999******************************************************* PP

             STAT  94 kypfleavskpirCisrsrntrs 116
                      +ypflea s pirCisrsr++r 
  Spipo30G0002600 330 RYPFLEAHSPPIRCISRSRQNRG 352
                      *******************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.505.106.2E-4619678IPR000980SH2 domain
SuperFamilySSF555502.49E-5625683IPR000980SH2 domain
PROSITE profilePS500019.529627723IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MGEEGGESLD GDYSELKDLR ISLDRRVVNG GGDEGGAGFC LCFWMYLKSP IIPSTVVLRQ  60
MHSDTNHEAP FLSLNEEKMI LFPLLVLDDE APNGISVSYD NISSATAEIG CLSDKWIHVG  120
CEILMKGVYL QQALKTVTTV AEKSLSSFSK NPDQDILEGI SLAGNDGCDK RLEGYIHDLQ  180
IFPLSSYRTI NDLSTKNLPI RLTLDCSHIS DGVEEECNGV WNIVGGKASC RRKFSLDVAL  240
LDAFGFTVHR EFELIASLVY ADNGTAVKKP LDNGEAPLLI HCDGLEFPST ERTVKLIDGR  300
ASVKLKISQL SSKCENRLFR IHFYAPGAQR YPFLEAHSPP IRCISRSRQN RGSFDLGRKR  360
SHSVGAEERS HEINDNCSVM QLSNESDSKS SCPSSKHPEY GYDDSHVRAE ANESFQGNGH  420
NSHNLTSNGG NVTGTYLDAK FEHHVGSDTV LSDSESTDAR NSVFRKLDDG RKSISDATVF  480
KYCLEGTEER SFILRDVISF ACDEDIMSFA EQISLYAGCR HHRYQILIAK QLVNEGNDSW  540
RSISHNDNRV LWSDIIPEID RKFRKISCSI SRGLSRKDLE VLRRITGCGE DLAREDFDRM  600
WHWLFPVAFT LSKDHINPLW ESTSPMWIEG IVTKEEAEAS LRGPGGHLEP GTFVLRFPTS  660
RSWPHPDAGS LVVTYVGADH ALHNRLLVVA DSLPTSFSRN MTPFFGTAGD NREQSPRPLQ  720
ELLLQEPELT HLASCILICF NSRSSDLAAP RFTRTFIDDI SSRAMKKKGF FTVLGISAKC  780
LIHWDATQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026658981.10.0SH2 domain-containing protein A-like isoform X1
RefseqXP_026658982.10.0SH2 domain-containing protein A-like isoform X1
RefseqXP_026658983.10.0SH2 domain-containing protein A-like isoform X1
RefseqXP_026658984.10.0SH2 domain-containing protein A-like isoform X1
TrEMBLA0A1D1XYH60.0A0A1D1XYH6_9ARAE; Signal transducer and activator of transcription A (Fragment)
STRINGXP_008784704.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75473135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.11e-143SH2 domain protein B