PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo2G0124500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | Dof | ||||||||
Protein Properties | Length: 318aa MW: 33252.8 Da PI: 8.7963 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.2 | 7.3e-38 | 33 | 93 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+ lkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP Ggg+rk +ks+ Spipo2G0124500 33 PEQGLKCPRCDSYNTKFCYYNNYSLTQPRHFCKSCRRYWTKGGALRNVPFGGGSRKTRKSR 93 67899***************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-25 | 30 | 91 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.6E-33 | 35 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.863 | 37 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 39 | 75 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010052 | Biological Process | guard cell differentiation | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1902066 | Biological Process | regulation of cell wall pectin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MTPAQAGSVR GPEGSNTSAC GGGGGGGTSP RPPEQGLKCP RCDSYNTKFC YYNNYSLTQP 60 RHFCKSCRRY WTKGGALRNV PFGGGSRKTR KSRSMASLSS STASFRLSAD LHGRAMQEPS 120 FFQLGGYNAY SPVCGTSGGV ASQVLSFGGI SSSTTVGASA APLVVLDCPA PAVSFFNEMG 180 CRGETATTTS EESMGSIHRN LATSIESLSS INQDLHWKLQ QQRLAMFFGG EGHHPTKEGT 240 GGAAVLNALS RHHPPPSLLF SSSRELSAGG ARGGGATGYF LENSTHNTAT VDDNSFAAND 300 WTGTPTWSDV HPFGALR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726997 | 2e-50 | KJ726997.1 Zea mays clone pUT3969 C2C2-DOF transcription factor (DOF24) gene, partial cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 2e-44 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo2G0124500 |