PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0120600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family G2-like
Protein Properties Length: 378aa    MW: 40529.2 Da    PI: 6.9627
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0120600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.83.9e-31244300156
         G2-like   1 kprlrWtpeLHerFveaveqLGGse.kAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     kpr++W+peLH+rFv+a++qLGG++  AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Spipo2G0120600 244 KPRRCWSPELHRRFVNALQQLGGAQgSATPKQIRELMKVDGLTNDEVKSHLQKYRLH 300
                     79*********************8748****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.216241302IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-29242303IPR009057Homeodomain-like
SuperFamilySSF466894.24E-18242303IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-26244300IPR006447Myb domain, plants
PfamPF002492.3E-7246298IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGPAVRPELA LDLGPPSSGG FVPQREAAPG EGRAAKLEEY VRRLEEERRK IEVFRRELPL  60
CMLILNDTIE GVKEELAGCR DGGGGGRPAL EEFMPVNAKL EEAEGGVRDE KDFRDKVNWM  120
SSAQLWSDNY SANTSSTTST TVASSSNSQK KGSERAAEDR SGGGGGGAFL PFKEMAGKEK  180
AAAVPLPPPD LSLLSPATKA SSSGEHQRSG GSISLTRVSS RGTGMASPAG NEQPPPSHQA  240
APRKPRRCWS PELHRRFVNA LQQLGGAQGS ATPKQIRELM KVDGLTNDEV KSHLQKYRLH  300
TRRLPSSSSP EKHPMMVLGG LWAPPENFPL LKQATGSPQG PLHLANAGED SGEEEDGRSE  360
SYSWKGHLQR PAGEETD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792589.11e-113myb family transcription factor EFM
TrEMBLA0A1D1YB931e-134A0A1D1YB93_9ARAE; Two-component response regulator ARR18
STRINGXP_008792589.11e-113(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.13e-48G2-like family protein