PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo2G0119700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | Dof | ||||||||
Protein Properties | Length: 335aa MW: 36244 Da PI: 9.555 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.9 | 5.1e-39 | 67 | 126 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprCdstntkfCyynny+l+qPr+fCk+CrryWt+GGalrnvP+Ggg+rk k+s Spipo2G0119700 67 EQQNLRCPRCDSTNTKFCYYNNYNLTQPRHFCKTCRRYWTQGGALRNVPIGGGCRKTKTS 126 57899***************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-26 | 67 | 124 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.4E-33 | 69 | 125 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.413 | 71 | 125 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 73 | 109 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MVCIVLGLEN ISVRRKEEGK MIQELLGGAA DDRKVCVSGG LLGAAVDPPL PNPSSSSASP 60 SSTTNSEQQN LRCPRCDSTN TKFCYYNNYN LTQPRHFCKT CRRYWTQGGA LRNVPIGGGC 120 RKTKTSGITV GPGKSSGGGA TKVRPLAGFS VGVGSPTGFN HELHSNTILW AEPLNSQLLA 180 LLRATTQSSS VSNSNTNSIP IPNPNPTPAT SISPFRIKED DPAVASNLVP DASLLINALN 240 SRSLGIDPFG LRSSLWKLQQ QQQEPQQEQN NGFLFSEPPT SGIHELLQKL RSQGNYWTDH 300 PGMAPGNVFV FPLWARRFIL SCDGVIELRS WKRR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC186748 | 5e-48 | AC186748.1 Musa acuminata clone MA4_8L21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011039230.1 | 1e-70 | PREDICTED: dof zinc finger protein DOF1.1-like isoform X1 | ||||
Refseq | XP_011039231.1 | 5e-71 | PREDICTED: dof zinc finger protein DOF1.1-like isoform X2 | ||||
TrEMBL | A0A2I4F418 | 8e-69 | A0A2I4F418_JUGRE; dof zinc finger protein DOF5.3-like | ||||
STRING | POPTR_0007s11620.1 | 4e-69 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7710 | 31 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 7e-34 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo2G0119700 |